Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Apodemus_20sylvaticus_20[genbank_20GCA_5F001305905.1_202015-10-02] 559,629 sequences; 3,758,143,898 total letters Query= NC_028650.1 Length=4634 Score E Sequences producing significant alignments: (Bits) Value seq560 286 1e-73 >seq560 Length=1076375 Score = 286 bits (316), Expect = 1e-73 Identities = 337/448 (75%), Gaps = 6/448 (1%) Strand=Plus/Minus Query 1309 AAGTATTTCATGCAATTATGTGCTGTCTAAACAAACAGATGGGAAAAA-GAAACACAATT 1367 ||||||| ||||| || || || |||||||| || | | || ||| | ||||||||| Sbjct 40058 AAGTATTACATGCTATGATCTGTGTTCTAAACAGACC-AGGAGACAAACGGAACACAATT 40000 Query 1368 CTACTTTGTGGTCCAGCAAGTACAGGAAAAAGCTTACTAGCACAAAAAATAGCTCAGTTA 1427 ||| | ||| || || || || ||||||||| | | |||||| |||||||||| Sbjct 39999 CTATTACATGGACCTGCCAGCACTGGAAAAAGCATTATTGCACAAGTCATAGCTCAGTGT 39940 Query 1428 GTTGGAAATGTAGGTTGCTACAACGCTAGCAA-TGTAAACTTTCCATTCAATGATTGTAG 1486 |||| ||||| || || ||||| || ||||| ||| ||||||||||| ||||| |||| Sbjct 39939 ATTGGTAATGTTGGCTGTTACAATGC-AGCAAATGTGAACTTTCCATTTAATGACTGTAC 39881 Query 1487 CAACAAAAACCTAATATGGATAGAAGAAGCAGGAAACTTTGGAACTCAAGTAAACCAATT 1546 ||||||||||||||||||| |||||||||| ||||||||| | | |||||||||||||| Sbjct 39880 CAACAAAAACCTAATATGGGTAGAAGAAGCGGGAAACTTTAGTAACCAAGTAAACCAATT 39821 Query 1547 CAAAGCAATCATGAGTGGTCAATCAATCAGACTAGACCAAAAAGGCAAAGGCAGCAAAAC 1606 ||||| || |||||| | || ||| | ||| ||||||||||||||||||| Sbjct 39820 TAAAGCTATTTGTTCAGGTCAAACTATAAGAATTGACTAAAAAGGCAAAGGCAGCAAGCA 39761 Query 1607 CATAGAACCAACTCCAGTAATTATGACCACAAATGAAGACATTACTAAGGTCGTGGTAGG 1666 ||||||||||||||||| || ||||| || ||||||||||| || || || | || Sbjct 39760 AATAGAACCAACTCCAGTTATAATGACAACCAATGAAGACATCACCAAAGTTAGAATTGG 39701 Query 1667 GTCAGAACTTAGACCTGAACACAAACAACCAATCATGGACAG-ATGTATACAAATACGCT 1725 | ||| ||||| ||||||| |||||||||| || || ||| | | | | || Sbjct 39700 CTGTGAAGAAAGACCAGAACACACTCAACCAATCAGAGATAGAATGCTCAACATTCCTCT 39641 Query 1726 TAACCACAAGACTTCCTGGAGACTTTGG 1753 | || || ||| || ||||||||||| Sbjct 39640 CACACATAA-ACTGCCAGGAGACTTTGG 39614 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 14626719318015