Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Apodemus_20sylvaticus_20[genbank_20GCA_5F001305905.1_202015-10-02] 559,629 sequences; 3,758,143,898 total letters Query= NC_029797.1 Length=4765 Score E Sequences producing significant alignments: (Bits) Value seq560 286 1e-73 >seq560 Length=1076375 Score = 286 bits (316), Expect = 1e-73 Identities = 300/392 (77%), Gaps = 2/392 (1%) Strand=Plus/Minus Query 1166 AAGTATTCCATGCAATCATGTGCTGTCTCAACAAACAAATGGGCAAAAGAAACACCATTC 1225 ||||||| ||||| || || || ||| |||| || | | |||| | ||||| |||| Sbjct 40058 AAGTATTACATGCTATGATCTGTGTTCTAAACAGACCAGGAGACAAACGGAACACAATTC 39999 Query 1226 TACTGTGTGGGCCTGCAAGCACTGGCAAAAGCCTAATAGCACAAAAAATATGCCAACTGG 1285 || | ||| ||||| |||||||| |||||| | || |||||| ||| || | || Sbjct 39998 TATTACATGGACCTGCCAGCACTGGAAAAAGCATTATTGCACAAGTCATA-GCTCAGTGT 39940 Query 1286 -TTGGTAATGTTGGTTGCTACAATGCCTCAAATGTAAACTTTCCTTTCAATGACTGCAGC 1344 ||||||||||||| || |||||||| ||||||| |||||||| || |||||||| | | Sbjct 39939 ATTGGTAATGTTGGCTGTTACAATGCAGCAAATGTGAACTTTCCATTTAATGACTGTACC 39880 Query 1345 AACAAAAATATAATCTGGGTAGAAGAAGCTGGCAACTTTGGAGGCCAAGTAAACCAATTC 1404 |||||||| |||| |||||||||||||| || |||||| | ||||||||||||||| Sbjct 39879 AACAAAAACCTAATATGGGTAGAAGAAGCGGGAAACTTTAGTAACCAAGTAAACCAATTT 39820 Query 1405 AAAACAATCATGAGTGGCCAATCAATCAGACTTGACCAAAAAGGAAAAGGCAGTAAAGAA 1464 ||| | || || ||| | || ||| ||||| ||||||| |||||||| || || Sbjct 39819 AAAGCTATTTGTTCAGGTCAAACTATAAGAATTGACTAAAAAGGCAAAGGCAGCAAGCAA 39760 Query 1465 ATCCAACCAACTCCAGTCATAATGACTACAAATGAAGACATAACCAAAGTAATGATAGGA 1524 || ||||||||||||| |||||||| || ||||||||||| |||||||| | || || Sbjct 39759 ATAGAACCAACTCCAGTTATAATGACAACCAATGAAGACATCACCAAAGTTAGAATTGGC 39700 Query 1525 TGTGAACTCAAACCAGAACACAAACAACCTAT 1556 |||||| | ||||||||||| ||||| || Sbjct 39699 TGTGAAGAAAGACCAGAACACACTCAACCAAT 39668 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 15043353419050