Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Apodemus_20sylvaticus_20[genbank_20GCA_5F001305905.1_202015-10-02] 559,629 sequences; 3,758,143,898 total letters Query= NC_030837.1 Length=4639 Score E Sequences producing significant alignments: (Bits) Value seq560 309 9e-81 >seq560 Length=1076375 Score = 309 bits (342), Expect = 9e-81 Identities = 309/401 (77%), Gaps = 0/401 (0%) Strand=Plus/Minus Query 1259 AAGTTTACCATGCAATGAGCTGTTGCCTTAACAAACAACTAGGCAAACGAAACACAATCC 1318 |||| | ||||| |||| |||| || |||| || | || |||||| |||||||| | Sbjct 40058 AAGTATTACATGCTATGATCTGTGTTCTAAACAGACCAGGAGACAAACGGAACACAATTC 39999 Query 1319 TACTATGTGGACCTGCAAGTACAGGCAAAAGCCTACTAGCACAAGAAATAGCAAAACTAG 1378 || || ||||||||| || || || |||||| | | ||||||| ||||| | Sbjct 39998 TATTACATGGACCTGCCAGCACTGGAAAAAGCATTATTGCACAAGTCATAGCTCAGTGTA 39939 Query 1379 TTGGTAATGTTGGATGCTATAATGCAGCAAATCAAAACTTTCCATTCAATGACTGTAGCA 1438 ||||||||||||| || || |||||||||||| ||||||||||| |||||||||| || Sbjct 39938 TTGGTAATGTTGGCTGTTACAATGCAGCAAATGTGAACTTTCCATTTAATGACTGTACCA 39879 Query 1439 ACAAAAACCTAATCTGGGTAGAAGAAGCTGGTAACTTTGGTGTACAAGTAAACCAATTTA 1498 ||||||||||||| |||||||||||||| || |||||| || |||||||||||||||| Sbjct 39878 ACAAAAACCTAATATGGGTAGAAGAAGCGGGAAACTTTAGTAACCAAGTAAACCAATTTA 39819 Query 1499 AAGCAATTATGAGTGGCCAGGCAATCAGACTAGACCAAAAAGGCAAAGGCAGCAAATCAA 1558 |||| ||| || || | || ||| | ||| ||||||||||||||||||| || Sbjct 39818 AAGCTATTTGTTCAGGTCAAACTATAAGAATTGACTAAAAAGGCAAAGGCAGCAAGCAAA 39759 Query 1559 TTGAACCAACTCCAGTCATTATGACTACTAATGAAGATATCACAAGAGTCATGGTTGGTT 1618 | |||||||||||||| || ||||| || |||||||| ||||| | ||| | |||| | Sbjct 39758 TAGAACCAACTCCAGTTATAATGACAACCAATGAAGACATCACCAAAGTTAGAATTGGCT 39699 Query 1619 CTGAACTAAAACCAGAACACAAACAACCTATCATGGACAGA 1659 |||| || ||||||||||| ||||| |||| || ||| Sbjct 39698 GTGAAGAAAGACCAGAACACACTCAACCAATCAGAGATAGA 39658 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 14642621382940