Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Castor_20canadensis_20[refseq_20GCF_5F001984765.1_202017-02-04] 21,157 sequences; 2,518,306,565 total letters Query= NC_006152.1 Length=4642 Score E Sequences producing significant alignments: (Bits) Value seq9192 140 1e-29 >seq9192 Length=405504 Score = 140 bits (154), Expect = 1e-29 Identities = 354/536 (66%), Gaps = 23/536 (4%) Strand=Plus/Plus Query 993 TCAAAAGCAAGACTTCCCAGAAATACATGGCGCTCGTCAACTGGCTCGTGGAGCACGGCA 1052 |||||| ||| | ||||||||||||| | | ||||| ||||| ||||| | || | Sbjct 189565 TCAAAAACAAATCAAGCCAGAAATACATG-CTTTTGTCAATTGGCTTGTGGAAAATGGTA 189623 Query 1053 TCACTTCCGAGAAGC-AGTGGATCCAGGAAAATCAGGAGAGCTACCTCTCCTTCAACTCC 1111 ||||| || | || | ||| | || || ||||| || |||| | |||||| Sbjct 189624 TCACTACCAAAAAACTAGTCAGTTCAAGAGAATCAAGAATCCTACATTAGCTTCAA---- 189679 Query 1112 ACCGGCAACTCTCGGAGCCAGATCAAGGCCGCGCTCGACAACGCGACCAAAATTATGAGT 1171 | || || | ||||| | |||| || || || ||| | |||||| Sbjct 189680 ---------TGTCAGATC-AGATCTA-----CGCTAGATAATATCACTAAAGTGATGAGT 189724 Query 1172 CTGACAAAAAGCGCGGTGGACTACCTCGTGGGGAGCTCCGTTCCCGAGGACATTTCAAAA 1231 |||||||||| ||| | || || ||| |||| | || ||||| || ||||| || | Sbjct 189725 CTGACAAAAACCGCCGAGGCTTATCTCATGGGAAATTCTGTTCCAGAAGACAT--CATTA 189782 Query 1232 AACAGAATCTGGCAAATTTTTGAGATGAATGGCTACGACCCGGCCTACGCGGGATCCATC 1291 || | ||||||||| |||||| | | | || | | |||| | || ||| Sbjct 189783 AAAAAAATCTGGCAGATTTTTCAATACACCAGGTATTATCTGGCCCGTGTAGGTGGCATT 189842 Query 1292 CTCTACGGCTGGTGTCAGCGCTCCTTCAACAAGAGGAACACCGTCTGGCTCTACGGACCC 1351 || || || ||||| | || || | || |||| | ||| | || || Sbjct 189843 CTGTATGGATGGTGCAAATGCAAATTTGGAAGGACAGACACAATGTGGTTGTATAGATTT 189902 Query 1352 GCCACGACCGGCAAGACCAACATCGCGGAGGCCATCGCCCACACTGTGCCCTTTTACGGC 1411 || || | | ||| ||||||| | ||||| || ||||| |||| || ||||| || Sbjct 189903 GCGACCTTCAGAAAGTCCAACATTGGTGAGGCTATTGCCCATGCTGTACCATTTTATAGC 189962 Query 1412 TGCGTGAACTGGACCAATGAAAACTTTCCCTTTAATGACTGTGTGGACAAAATGCTCATT 1471 ||| | ||||||||||| |||||||||||| || ||||| | || ||||||||||| Sbjct 189963 TGCATCAACTGGACCAACAAAAACTTTCCCTGTATTGACTACATTGAGGAAATGCTCATT 190022 Query 1472 TGGTGGGAGGAGGGAAAGATGACCAACAAGGTGGTTGAATCCGCCAAGGCCATCCT 1527 || ||||| || || ||||||||| ||| || || || || | |||| ||||| Sbjct 190023 TGATGGGAAGAAGGCAAGATGACCCCCAAAGTAGTGGAGTCAGTGAAGGTTATCCT 190078 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 14738988539535