Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cavia_20aperea_20[genbank_20GCA_5F000688575.1_202014-01-21] 3,131 sequences; 2,716,396,567 total letters Query= NC_001401.2 Length=4679 Score E Sequences producing significant alignments: (Bits) Value seq289 379 6e-102 >seq289 Length=23972852 Score = 379 bits (420), Expect = 6e-102 Identities = 532/741 (72%), Gaps = 4/741 (1%) Strand=Plus/Plus Query 990 TACATGGAGCTGGTCGGGTGGCTCGTGGACAAGGGGATTACCTCGGAGAAGCAGTGGATC 1049 ||||||| ||| || ||||| ||||| || | || || || ||| |||| |||||| Sbjct 10617424 TACATGGCTCTGATCATCTGGCTGGTGGAGAACCGTATCACGTCTGAGCAGCAATGGATC 10617483 Query 1050 CAGGAGGACCAGGCCTCATACATCTCCTTCAATGCGGCCTCCAACTCGCGGTCCCAAATC 1109 |||||| | || | || | || | | || | | ||| | | || || ||| Sbjct 10617484 CAGGAGAATCAAGAGAGTTATCTGTCGTATAGTG-GACGGGTAACGCTTGTTCTCAGATC 10617542 Query 1110 AAGGCTGCCTTGGACAATGCGGGAAAGATTATGAGCCTGACTAAAACCGCCCCCGACTAC 1169 |||| || ||| ||||||| | |||||||||| |||||| || || || | ||||| Sbjct 10617543 AAGGTGGCTTTGAACAATGCCTGCAAGATTATGAACCTGACCAAGACAGCAGCGGACTAT 10617602 Query 1170 CTGGTGGGCCAGCAGCCCGTGGAGGACATTTCCAGCAATCGGATTTATAAAATTTTGGAA 1229 |||||||| || || || ||||| || |||||||| | || | Sbjct 10617603 TTGGTGGGCAAGGAGTCCCCTACCAACATTGAGGAAAACAGGATTTATCGCCTGTTTAGA 10617662 Query 1230 CTAAACGGGTACGATCCCCAATATGCGGCTTCCGTCTTTCTGGGATGG-GCCACGAAAAA 1288 || || || || ||||| |||| || ||| | | ||||| ||| | || || | Sbjct 10617663 CTGAATGGATATGATCCGGCCTATGGGGGATCCATACTGCTGGGCTGGTGTCAA-AAGGA 10617721 Query 1289 GTTCGGCAAGAGGAACACCATCTGGCTGTTTGGGCCTGCAACTACCGGGAAGACCAACAT 1348 | |||||| | |||||| | ||| ||||||| || | || || || ||||||||||| Sbjct 10617722 CTCTGGCAAGCGAAACACCTTGTGGGTGTTTGGACCGGTGACCACAGGCAAGACCAACAT 10617781 Query 1349 CGCGGAGGCCATAGCCCACACTGTGCCCTTCTACGGGTGCGTAAACTGGACCAATGAGAA 1408 || ||||||| | | || |||| | ||| |||||||| ||||||||||| |||||||| Sbjct 10617782 CGTGGAGGCCTCA-CTCATGCTGTACGCTTTTACGGGTGTGTAAACTGGACTAATGAGAA 10617840 Query 1409 CTTTCCCTTCAACGACTGTGTCGACAAGATGGTGATCTGGTGGGAGGAGGGGAAGATGAC 1468 ||||||||||||| |||| |||||||||||| | || |||||| |||| || |||||||| Sbjct 10617841 CTTTCCCTTCAACAACTGCGTCGACAAGATGCTCATTTGGTGGAAGGAAGGCAAGATGAC 10617900 Query 1469 CGCCAAGGTCGTGGAGTCGGCCAAAGCCATTCTCGGAGGAAGCAAGGTGCGCGTGGACCA 1528 |||||||| ||||| || ||||| ||||| | || || ||| | || ||||| || Sbjct 10617901 GGCCAAGGTAGTGGAATCTGCCAAGGCCATCTTGGGGGGTGCCAAAGGACGGGTGGATCA 10617960 Query 1529 GAAATGCAAGTCCTCGGCCCAGATAGACCCGACTCCCGTGATCGTCACCTCCAACACCAA 1588 ||||| || ||||| | || ||||| | || || || ||| | ||||||| | ||| Sbjct 10617961 CAAATGTAAATCCTCCGTACAAATAGATGCCACCCCGGTCATCATTACCTCCAGTAGCAA 10618020 Query 1589 CATGTGCGCCGTGATTGACGGGAACTCAACGACCTTCGAACACCAGCAGCCGTTGCAAGA 1648 |||| || | | || || || ||||| |||| ||| |||||| |||||||||| || || Sbjct 10618021 CATGGGCTGCATCATCGAGGGAAACTCGACGAACTTTGAACACGAGCAGCCGTTACAGGA 10618080 Query 1649 CCGGATGTTCAAATTTGAACTCACCCGCCGTCTGGATCATGACTTTGGGAAGGTCACCAA 1708 |||||||| ||||||||||| || | | || | ||||||||| || | ||||| Sbjct 10618081 TCGGATGTTTAAATTTGAACTGACTCAAAGACTCATACGTGACTTTGGAAAAATTACCAA 10618140 Query 1709 GCAGGAAGTCAAAGACTTTTT 1729 |||||||||||||||||||| Sbjct 10618141 ACAGGAAGTCAAAGACTTTTT 10618161 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 14860291087260