Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cavia_20aperea_20[genbank_20GCA_5F000688575.1_202014-01-21] 3,131 sequences; 2,716,396,567 total letters Query= NC_001510.1 Length=5149 Score E Sequences producing significant alignments: (Bits) Value seq98 167 8e-38 >seq98 Length=1295472 Score = 167 bits (184), Expect = 8e-38 Identities = 195/262 (74%), Gaps = 1/262 (0%) Strand=Plus/Plus Query 1506 GTTGGCAATGTTGGTTGCTATAATGCAGCCAATGTAAACTTTCCATTTAATGACTGTACC 1565 ||||| |||||||| ||||| ||| ||| || | |||||||| ||||||||||| | Sbjct 79754 GTTGGTAATGTTGGGTGCTACAATCCAGGAGATATTAACTTTCC-TTTAATGACTGCTGC 79812 Query 1566 AACAAGAACTTGATTTGGGTAGAAGAAGCTGGTAACTTTGGACAGCAAGTAAACCAGTTT 1625 | || || | | |||| ||||||||||||| || || || |||||||||||||| || Sbjct 79813 AGAAAAGACATAACTTGGATAGAAGAAGCTGGAAATTTAGGGCAGCAAGTAAACCAATTC 79872 Query 1626 AAAGCCATTTGCTCTGGTCAAACTATTCGCATTGATCAAAAAGGAAAAGGCAGCAAACAG 1685 || || || || || || | ||| | ||||||||||| | ||||| |||||| Sbjct 79873 AAGGCAATCATGTCAGGGCACATCATTAGACTTGATCAAAAAAGGAAAGGTAGCAAATCC 79932 Query 1686 ATTGAACCAACACCAGTCATCATGACCACAAATGAGAACATTACAGTGGTCAGAATAGGC 1745 ||||||| |||| |||| ||||| || | | |||| ||||||| || || ||||| | Sbjct 79933 ATTGAACTAACATCAGTAATCATAACTAGCAGTGAGGACATTACTGTTGTTAGAATTGAA 79992 Query 1746 TGCGAAGAAAGACCAGAACACA 1767 || || ||||||||||||| Sbjct 79993 TGTAAAATTAGACCAGAACACA 80014 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 16364239582310