Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cavia_20aperea_20[genbank_20GCA_5F000688575.1_202014-01-21] 3,131 sequences; 2,716,396,567 total letters Query= NC_001539.1 Length=5323 Score E Sequences producing significant alignments: (Bits) Value seq98 150 6e-33 >seq98 Length=1295472 Score = 150 bits (166), Expect = 6e-33 Identities = 190/260 (73%), Gaps = 1/260 (0%) Strand=Plus/Plus Query 1520 GTGGGTAATGTTGGTTGTTATAATGCAGCAAATGTAAATTTTCCATTTAATGACTGTACC 1579 || ||||||||||| || || ||| ||| | || | || ||||| ||||||||||| | Sbjct 79754 GTTGGTAATGTTGGGTGCTACAATCCAGGAGATATTAACTTTCC-TTTAATGACTGCTGC 79812 Query 1580 AATAAAAATTTAATTTGGATTGAAGAAGCTGGTAACTTTGGTCAACAAGTTAATCAATTT 1639 | ||| | ||| |||||| ||||||||||| || || || || ||||| || ||||| Sbjct 79813 AGAAAAGACATAACTTGGATAGAAGAAGCTGGAAATTTAGGGCAGCAAGTAAACCAATTC 79872 Query 1640 AAAGCAATTTGTTCTGGACAAACAATTAGAATTGATCAAAAAGGTAAAGGAAGTAAGCAA 1699 || ||||| || || || | |||||| ||||||||||| | ||||| || || Sbjct 79873 AAGGCAATCATGTCAGGGCACATCATTAGACTTGATCAAAAAAGGAAAGGTAGCAAATCC 79932 Query 1700 ATTGAACCAACTCCAGTAATTATGACAACTAATGAAAATATAACAATTGTGAGAATTGGA 1759 ||||||| ||| ||||||| || || | | ||| | || || |||| ||||||| | Sbjct 79933 ATTGAACTAACATCAGTAATCATAACTAGCAGTGAGGACATTACTGTTGTTAGAATTGAA 79992 Query 1760 TGTGAAGAAAGACCTGAACA 1779 ||| || ||||| ||||| Sbjct 79993 TGTAAAATTAGACCAGAACA 80012 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 16921020514520