Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cavia_20aperea_20[genbank_20GCA_5F000688575.1_202014-01-21] 3,131 sequences; 2,716,396,567 total letters Query= NC_001701.1 Length=5106 Score E Sequences producing significant alignments: (Bits) Value seq289 154 5e-34 >seq289 Length=23972852 Score = 154 bits (170), Expect = 5e-34 Identities = 295/431 (68%), Gaps = 3/431 (1%) Strand=Plus/Plus Query 1522 GAAACGCCATATGGCTCTACGGACCTGCCACCACCGGGAAGACCAACATTGCAGAAGCTA 1581 ||||| || | ||| | | ||||| | ||||| || ||||||||||| | || || Sbjct 10617733 GAAACACCTTGTGGGTGTTTGGACCGGTGACCACAGGCAAGACCAACATCGTGGAGGCC- 10617791 Query 1582 TTGCCCATGCTGTACCCTTCTATGGCTGTGTTAACTGGACTAATGAGAACTTTCCTTTTA 1641 | | |||||||||| ||| || || ||||| ||||||||||||||||||||||| || | Sbjct 10617792 TCACTCATGCTGTACGCTTTTACGGGTGTGTAAACTGGACTAATGAGAACTTTCCCTTCA 10617851 Query 1642 ATGATTGTGTTGATAAAATGCTGATTTGGTGGGAGGAGGGAAAAATGACTAATAAGGTTG 1701 | | || || || || ||||| ||||||||| |||| || || ||||| ||||| | Sbjct 10617852 ACAACTGCGTCGACAAGATGCTCATTTGGTGGAAGGAAGGCAAGATGACGGCCAAGGTAG 10617911 Query 1702 TTGAATCTGCAAAAGCAATTTTGGGAGGGTCTGCTGTCCGGGTAGACCAGAAATGTAAAG 1761 | |||||||| || || || ||||| || | | ||||| || || ||||||||| Sbjct 10617912 TGGAATCTGCCAAGGCCATCTTGGGGGGTGCCAAAGGACGGGTGGATCACAAATGTAAAT 10617971 Query 1762 GATCTGTTTGTATTGAACCTACTCCTGTAATTATTACTAGTAATACTGATATGTGTATGA 1821 || || || || | || || || || ||||| | || | ||| | | Sbjct 10617972 CCTCCGTACAAATAGATGCCACCCCGGTCATCATTACCTCCAGTAGCAACATGGGCTGCA 10618031 Query 1822 TTGTTGATGGCAACTCTACTACAATGGAACA-TAGAATACCATTAGAGGAGCGTATGTTT 1880 | | || || ||||| || | | ||||| || | || ||| |||| || |||||| Sbjct 10618032 TCATCGAGGGAAACTCGACGAACTTTGAACACGAGCA-GCCGTTACAGGATCGGATGTTT 10618090 Query 1881 CAAATTGTCCTATCACATAAATTGGAGCCTTCTTTTGGAAAAATTTCTAAAAAAGAAGTC 1940 || ||| || | || | | | | | |||||||||||| | ||| | |||||| Sbjct 10618091 AAATTTGAACTGACTCAAAGACTCATACGTGACTTTGGAAAAATTACCAAACAGGAAGTC 10618150 Query 1941 AGAGAATTTTT 1951 | ||| ||||| Sbjct 10618151 AAAGACTTTTT 10618161 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 16226644294465