Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cavia_20aperea_20[genbank_20GCA_5F000688575.1_202014-01-21] 3,131 sequences; 2,716,396,567 total letters Query= NC_001718.1 Length=5075 Score E Sequences producing significant alignments: (Bits) Value seq98 188 2e-44 >seq98 Length=1295472 Score = 188 bits (208), Expect = 2e-44 Identities = 277/383 (72%), Gaps = 7/383 (2%) Strand=Plus/Plus Query 1414 AAAGTCTGCCATGCTATAACTTG-TGTACTAAACAGACAAGGAGGAAAAAGAAATACAAT 1472 |||||| ||||| || || || ||| ||||||| ||| ||| ||| |||| ||| | Sbjct 79634 AAAGTCATTCATGCAATCACATGCTGT-CTAAACAAGCAACTAGGCAAATGAAACACAGT 79692 Query 1473 TCTATTTCATGGGCCAGCATCAACAGGAAAAAGTATAATTGCTCAACACATTGCAAACTT 1532 | || | || || || |||||||| || |||| | || | ||| | || Sbjct 79693 TTTACTGCAAGGAAATGCTAACACAGGAAAGAGCGTAATCACACAGAAAATTTTGAGGTT 79752 Query 1533 AGTTGGTAATGTTGGTTGCTACAATGCAGCCAATGTGAACTTTCCATTTAATGACTG-TA 1591 |||||||||||||| ||||||||| ||| || | |||||||| ||||||||||| | Sbjct 79753 GGTTGGTAATGTTGGGTGCTACAATCCAGGAGATATTAACTTTCC-TTTAATGACTGCTG 79811 Query 1592 CAAATAAAAACTTAATATGGATTGAAGAAGCAGGAAACTTCTCTAACCAAGTAAACCAAT 1651 || | ||| || ||| ||||| |||||||| ||||| || | ||||||||||||| Sbjct 79812 CAGA-AAAGACATAACTTGGATAGAAGAAGCTGGAAATTTAGGGCAGCAAGTAAACCAAT 79870 Query 1652 TCAAAGCCAT-ATGTTCAGGTCAAACAATTAGAATTGACCAAAAAGGTAAAGGAAGCAAA 1710 |||| || || ||| ||||| || | |||||| |||| |||||| | ||||| |||||| Sbjct 79871 TCAAGGCAATCATG-TCAGGGCACATCATTAGACTTGATCAAAAAAGGAAAGGTAGCAAA 79929 Query 1711 CAAATTGAACCAACTCCTGTAATAATGACTACAAATGAAGACATAACTAAAGTTAGAATA 1770 ||||||| ||| | ||||| || |||| | ||| ||||| ||| |||||||| Sbjct 79930 TCCATTGAACTAACATCAGTAATCATAACTAGCAGTGAGGACATTACTGTTGTTAGAATT 79989 Query 1771 GGATGCGAGGAAAGACCAGAACA 1793 | ||| | ||||||||||| Sbjct 79990 GAATGTAAAATTAGACCAGAACA 80012 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 16127447691600