Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cavia_20aperea_20[genbank_20GCA_5F000688575.1_202014-01-21] 3,131 sequences; 2,716,396,567 total letters Query= NC_001729.1 Length=4726 Score E Sequences producing significant alignments: (Bits) Value seq289 363 5e-97 seq966 78.8 3e-11 >seq289 Length=23972852 Score = 363 bits (402), Expect = 5e-97 Identities = 531/744 (71%), Gaps = 10/744 (1%) Strand=Plus/Plus Query 987 TACATGGAGCTGGTCGGGTGGCTGGTGGACCGCGGGATCACGTCAGAAAAGCAATGGATT 1046 ||||||| ||| || ||||||||||| | | |||||||| || |||||||||| Sbjct 10617424 TACATGGCTCTGATCATCTGGCTGGTGGAGAACCGTATCACGTCTGAGCAGCAATGGATC 10617483 Query 1047 CAGGAGGACCAGGCCTCGTACATCTCCTTCAACGC-CGCCTCCAACTCGCGGTCCCAGAT 1105 |||||| | || | || | || | | | || | ||| | | || ||||| Sbjct 10617484 CAGGAGAATCAAGAGAGTTATCTGTCGTATAGTGGACGGGT--AACGCTTGTTCTCAGAT 10617541 Query 1106 CAAGGCCGCGCTGGACAATGCCTCCAAGATCATGAGCCTGACAAAGACGGCTCCGGACTA 1165 ||||| || || ||||||||| |||||| |||| |||||| ||||| || ||||||| Sbjct 10617542 CAAGGTGGCTTTGAACAATGCCTGCAAGATTATGAACCTGACCAAGACAGCAGCGGACTA 10617601 Query 1166 CCTGGTGGGCAGCAACCCGCCGGAGGACATTACCAAAAATCGGATCTACCAAATCCTGG- 1224 ||||||||| | | || ||||| |||| |||| || | |||| Sbjct 10617602 TTTGGTGGGCAAGGAGTCCCCTACCAACATTGAGGAAAACAGGATTTATCG---CCTGTT 10617658 Query 1225 -AG-CTGAACGGGTACGATCCGCAGTACGCGGCCTCCGTCTTCCTGGGCTGGGCGCAAAA 1282 || ||||| || || |||||| || | || ||| | | ||||||||| ||||| Sbjct 10617659 TAGACTGAATGGATATGATCCGGCCTATGGGGGATCCATACTGCTGGGCTGGTGTCAAAA 10617718 Query 1283 GAAGTTCGGGAAGAGGAACACCATCTGGCTCTTTGGGCCGGCCACGACGGGTAAAACCAA 1342 | | | || ||| | |||||| | ||| | ||||| |||| || || || || ||||| Sbjct 10617719 GGACTCTGGCAAGCGAAACACCTTGTGGGTGTTTGGACCGGTGACCACAGGCAAGACCAA 10617778 Query 1343 CATCGCGGAAGCCATCGCCCACGCCGTGCCCTTCTACGGCTGCGTAAACTGGACCAATGA 1402 ||||| ||| ||| || | || || || | ||| ||||| || ||||||||||| ||||| Sbjct 10617779 CATCGTGGAGGCC-TCACTCATGCTGTACGCTTTTACGGGTGTGTAAACTGGACTAATGA 10617837 Query 1403 GAACTTTCCCTTCAACGATTGCGTCGACAAGATGGTGATCTGGTGGGAGGAGGGCAAGAT 1462 |||||||||||||||| | ||||||||||||||| | || |||||| |||| |||||||| Sbjct 10617838 GAACTTTCCCTTCAACAACTGCGTCGACAAGATGCTCATTTGGTGGAAGGAAGGCAAGAT 10617897 Query 1463 GACGGCCAAGGTCGTGGAGAGCGCCAAGGCCATTCTGGGCGGAAGCAAGGTGCGCGTGGA 1522 |||||||||||| ||||| ||||||||||| |||| || ||| | || ||||| Sbjct 10617898 GACGGCCAAGGTAGTGGAATCTGCCAAGGCCATCTTGGGGGGTGCCAAAGGACGGGTGGA 10617957 Query 1523 CCAAAAGTGCAAGTCATCGGCCCAGATCGAACCCACTCCCGTGATCGTCACCTCCAACAC 1582 || || || || || || | || || || |||| || || ||| | ||||||| | Sbjct 10617958 TCACAAATGTAAATCCTCCGTACAAATAGATGCCACCCCGGTCATCATTACCTCCAGTAG 10618017 Query 1583 CAACATGTGCGCCGTGATTGACGGGAACAGCACCACCTTCGAGCATCAGCAGCCGCTGCA 1642 ||||||| || | | || || || ||| || | ||| || || |||||||| | || Sbjct 10618018 CAACATGGGCTGCATCATCGAGGGAAACTCGACGAACTTTGAACACGAGCAGCCGTTACA 10618077 Query 1643 GGACCGGATGTTTGAATTTGAACTTACCCGCCGTTTGGACCATGACTTTGGGAAGGTCAC 1702 ||| ||||||||| |||||||||| || | | | | ||||||||| || | || Sbjct 10618078 GGATCGGATGTTTAAATTTGAACTGACTCAAAGACTCATACGTGACTTTGGAAAAATTAC 10618137 Query 1703 CAAACAGGAAGTAAAGGACTTTTT 1726 |||||||||||| || |||||||| Sbjct 10618138 CAAACAGGAAGTCAAAGACTTTTT 10618161 >seq966 Length=5769529 Score = 78.8 bits (86), Expect = 3e-11 Identities = 121/171 (71%), Gaps = 5/171 (3%) Strand=Plus/Minus Query 1331 GGGTAAAACCAACATCGCGGAAGCCATCGCCCACGCCGTGCCCTTCTACGGCTGCGTAAA 1390 ||| ||||||||| ||| | | || | |||||||| | || ||||| |||||| | | Sbjct 5424266 GGGAAAAACCAACCTCGAG-AGGCTACTGCCCACGCTTTTCCGTTCTAGGGCTGCCTCAG 5424208 Query 1391 CTGGACCAATGAGAACTTTCCCTTCAACGATTGCGTCGACAAGATGGTGATCTGGTGGGA 1450 ||| | ||| |||||| ||| | | ||| | || ||| || | | ||||||||| Sbjct 5424207 GTGGCCAAAT----ACTTTCGCTTTAGTGTCTGCCTGGAGAAGCTGATCAGCTGGTGGGA 5424152 Query 1451 GGAGGGCAAGATGACGGCCAAGGTCGTGGAGAGCGCCAAGGCCATTCTGGG 1501 |||||| |||| ||| | || ||||| ||||| |||| ||||||| Sbjct 5424151 GGAGGGAAAGAGGACAGTGAAAACGGTGGAATCCGCCATGGCCTTTCTGGG 5424101 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 15010685936765