Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cavia_20aperea_20[genbank_20GCA_5F000688575.1_202014-01-21] 3,131 sequences; 2,716,396,567 total letters Query= NC_001829.1 Length=4767 Score E Sequences producing significant alignments: (Bits) Value seq289 352 9e-94 >seq289 Length=23972852 Score = 352 bits (390), Expect = 9e-94 Identities = 527/742 (71%), Gaps = 6/742 (1%) Strand=Plus/Plus Query 1041 TACATGGAGCTGGTCGGGTGGCTGGTGGACCGCGGGATCACGTCAGAAAAGCAATGGATC 1100 ||||||| ||| || ||||||||||| | | |||||||| || ||||||||||| Sbjct 10617424 TACATGGCTCTGATCATCTGGCTGGTGGAGAACCGTATCACGTCTGAGCAGCAATGGATC 10617483 Query 1101 CAGGAGGACCAGGCGTCCTACATCTCCTTCAACGC-CGCCTCCAACTCGCGGTCACAAAT 1159 |||||| | || | | || | || | | | || | ||| | | || || || Sbjct 10617484 CAGGAGAATCAAGAGAGTTATCTGTCGTATAGTGGACGGGT--AACGCTTGTTCTCAGAT 10617541 Query 1160 CAAGGCCGCGCTGGACAATGCCTCCAAAATCATGAGCCTGACAAAGACGGCTCCGGACTA 1219 ||||| || || ||||||||| ||| || |||| |||||| ||||| || ||||||| Sbjct 10617542 CAAGGTGGCTTTGAACAATGCCTGCAAGATTATGAACCTGACCAAGACAGCAGCGGACTA 10617601 Query 1220 CCTGGTGGGCCAGAACCCGCCGGAGGACATTTCCAGCAACCGCATCTACCGAATCCTCGA 1279 |||||||| || | | || ||||| ||| | || || || | | | Sbjct 10617602 TTTGGTGGGCAAGGAGTCCCCTACCAACATTGAGGAAAACAGGATTTATCGCCTGTTT-A 10617660 Query 1280 GA-TGAACGGGTACGATCCGCAGTACGCGGCCTCCGTCTTCCTGGGCTGGGCGCAAAAGA 1338 || |||| || || |||||| || | || ||| | | ||||||||| |||||| Sbjct 10617661 GACTGAATGGATATGATCCGGCCTATGGGGGATCCATACTGCTGGGCTGGTGTCAAAAGG 10617720 Query 1339 AGTTCGGGAAGAGGAACACCATCTGGCTCTTTGGGCCGGCCACGACGGGTAAAACCAACA 1398 | | || ||| | |||||| | ||| | ||||| |||| || || || || ||||||| Sbjct 10617721 ACTCTGGCAAGCGAAACACCTTGTGGGTGTTTGGACCGGTGACCACAGGCAAGACCAACA 10617780 Query 1399 TCGCGGAAGCCATCGCCCACGCCGTGCCCTTCTACGGCTGCGTGAACTGGACCAATGAGA 1458 ||| ||| ||| || | || || || | ||| ||||| || || |||||||| ||||||| Sbjct 10617781 TCGTGGAGGCC-TCACTCATGCTGTACGCTTTTACGGGTGTGTAAACTGGACTAATGAGA 10617839 Query 1459 ACTTTCCGTTCAACGATTGCGTCGACAAGATGGTGATCTGGTGGGAGGAGGGCAAGATGA 1518 ||||||| |||||| | ||||||||||||||| | || |||||| |||| |||||||||| Sbjct 10617840 ACTTTCCCTTCAACAACTGCGTCGACAAGATGCTCATTTGGTGGAAGGAAGGCAAGATGA 10617899 Query 1519 CGGCCAAGGTCGTAGAGAGCGCCAAGGCCATCCTGGGCGGAAGCAAGGTGCGCGTGGACC 1578 |||||||||| || || |||||||||||| |||| || ||| | || ||||| | Sbjct 10617900 CGGCCAAGGTAGTGGAATCTGCCAAGGCCATCTTGGGGGGTGCCAAAGGACGGGTGGATC 10617959 Query 1579 AAAAGTGCAAGTCATCGGCCCAGATCGACCCAACTCCCGTGATCGTCACCTCCAACACCA 1638 | || || || || || | || || || | || || || ||| | ||||||| | || Sbjct 10617960 ACAAATGTAAATCCTCCGTACAAATAGATGCCACCCCGGTCATCATTACCTCCAGTAGCA 10618019 Query 1639 ACATGTGCGCGGTCATCGACGGAAACTCGACCACCTTCGAGCACCAACAACCACTCCAGG 1698 ||||| || ||||||| ||||||||||| | ||| || ||| | || || | |||| Sbjct 10618020 ACATGGGCTGCATCATCGAGGGAAACTCGACGAACTTTGAACACGAGCAGCCGTTACAGG 10618079 Query 1699 ACCGGATGTTCAAGTTCGAGCTCACCAAGCGCCTGGAGCACGACTTTGGCAAGGTCACCA 1758 | |||||||| || || || || || | | || | |||||||| || | |||| Sbjct 10618080 ATCGGATGTTTAAATTTGAACTGACTCAAAGACTCATACGTGACTTTGGAAAAATTACCA 10618139 Query 1759 AGCAGGAAGTCAAAGACTTTTT 1780 | |||||||||||||||||||| Sbjct 10618140 AACAGGAAGTCAAAGACTTTTT 10618161 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 15141881443780