Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cavia_20aperea_20[genbank_20GCA_5F000688575.1_202014-01-21] 3,131 sequences; 2,716,396,567 total letters Query= NC_002077.1 Length=4718 Score E Sequences producing significant alignments: (Bits) Value seq289 365 1e-97 seq966 95.1 4e-16 >seq289 Length=23972852 Score = 365 bits (404), Expect = 1e-97 Identities = 530/742 (71%), Gaps = 6/742 (1%) Strand=Plus/Plus Query 1004 TACATGGAGCTGGTCGGGTGGCTGGTGGACCGGGGCATCACCTCCGAGAAGCAGTGGATC 1063 ||||||| ||| || ||||||||||| | ||||| || ||| |||| |||||| Sbjct 10617424 TACATGGCTCTGATCATCTGGCTGGTGGAGAACCGTATCACGTCTGAGCAGCAATGGATC 10617483 Query 1064 CAGGAGGACCAGGCCTCGTACATCTCCTTCAACGC-CGCTTCCAACTCGCGGTCCCAGAT 1122 |||||| | || | || | || | | | || | ||| | | || ||||| Sbjct 10617484 CAGGAGAATCAAGAGAGTTATCTGTCGTATAGTGGACGGGT--AACGCTTGTTCTCAGAT 10617541 Query 1123 CAAGGCCGCTCTGGACAATGCCGGCAAGATCATGGCGCTGACCAAATCCGCGCCCGACTA 1182 ||||| ||| || |||||||| ||||||| ||| |||||||| | || | ||||| Sbjct 10617542 CAAGGTGGCTTTGAACAATGCCTGCAAGATTATGAACCTGACCAAGACAGCAGCGGACTA 10617601 Query 1183 CCTGGTAGGCCCCGCTCCGCCCGCGGACATTAAAACCAACCGCATCTACCGCATCCTGGA 1242 |||| ||| | | || | ||||| | ||| | || || ||| | | Sbjct 10617602 TTTGGTGGGCAAGGAGTCCCCTACCAACATTGAGGAAAACAGGATTTATCGCCTGTTTAG 10617661 Query 1243 GCTGAACGGCTACGAACCTGCCTACGCCGGCTCCGTCTTTCTCGGCTGGGCCCAGAAAAG 1302 ||||| || || || || ||||| | || ||| | | || |||||| || ||| | Sbjct 10617662 ACTGAATGGATATGATCCGGCCTATGGGGGATCCATACTGCTGGGCTGGTGTCA-AAAGG 10617720 Query 1303 GTTCGGG-AAGCGCAACACCATCTGGCTGTTTGGGCCGGCCACCACGGGCAAGACCAACA 1361 || || ||||| |||||| | ||| ||||||| |||| ||||| ||||||||||||| Sbjct 10617721 ACTCTGGCAAGCGAAACACCTTGTGGGTGTTTGGACCGGTGACCACAGGCAAGACCAACA 10617780 Query 1362 TCGCGGAAGCCATCGCCCACGCCGTGCCCTTCTACGGCTGCGTCAACTGGACCAATGAGA 1421 ||| ||| ||| || | || || || | ||| ||||| || || |||||||| ||||||| Sbjct 10617781 TCGTGGAGGCC-TCACTCATGCTGTACGCTTTTACGGGTGTGTAAACTGGACTAATGAGA 10617839 Query 1422 ACTTTCCCTTCAATGATTGCGTCGACAAGATGGTGATCTGGTGGGAGGAGGGCAAGATGA 1481 ||||||||||||| | ||||||||||||||| | || |||||| |||| |||||||||| Sbjct 10617840 ACTTTCCCTTCAACAACTGCGTCGACAAGATGCTCATTTGGTGGAAGGAAGGCAAGATGA 10617899 Query 1482 CGGCCAAGGTCGTGGAGTCCGCCAAGGCCATTCTCGGCGGCAGCAAGGTGCGCGTGGACC 1541 |||||||||| ||||| || ||||||||||| | || || ||| | || ||||| | Sbjct 10617900 CGGCCAAGGTAGTGGAATCTGCCAAGGCCATCTTGGGGGGTGCCAAAGGACGGGTGGATC 10617959 Query 1542 AAAAGTGCAAGTCGTCCGCCCAGATCGACCCCACCCCCGTGATCGTCACCTCCAACACCA 1601 | || || || || |||| || || || ||||||| || ||| | ||||||| | || Sbjct 10617960 ACAAATGTAAATCCTCCGTACAAATAGATGCCACCCCGGTCATCATTACCTCCAGTAGCA 10618019 Query 1602 ACATGTGCGCCGTGATTGACGGGAACAGCACCACCTTCGAGCACCAGCAGCCGTTGCAGG 1661 ||||| || | | || || || ||| || | ||| || ||| |||||||||| |||| Sbjct 10618020 ACATGGGCTGCATCATCGAGGGAAACTCGACGAACTTTGAACACGAGCAGCCGTTACAGG 10618079 Query 1662 ACCGGATGTTCAAATTTGAACTCACCCGCCGTCTGGAGCATGACTTTGGCAAGGTGACAA 1721 | |||||||| ||||||||||| || | | || | ||||||||| || | || | Sbjct 10618080 ATCGGATGTTTAAATTTGAACTGACTCAAAGACTCATACGTGACTTTGGAAAAATTACCA 10618139 Query 1722 AGCAGGAAGTCAAAGAGTTCTT 1743 | |||||||||||||| || || Sbjct 10618140 AACAGGAAGTCAAAGACTTTTT 10618161 >seq966 Length=5769529 Score = 95.1 bits (104), Expect = 4e-16 Identities = 152/214 (71%), Gaps = 7/214 (3%) Strand=Plus/Minus Query 1329 TGTTTGGGCCGGCCACCACGGGCAAGACCAACATCGCGGAAGCCATCGCCCACGCCGTGC 1388 |||||| || | | || ||| || |||||| ||| | | || | |||||||| | | Sbjct 5424285 TGTTTGACCCTGGGATCATGGGAAAAACCAACCTCGAG-AGGCTACTGCCCACGCTTTTC 5424227 Query 1389 CCTTCTACGGCTGCGTCAACTGGACCAATGAGAACTTTCCCTTCAATGATTGCGTCGACA 1448 | ||||| |||||| ||| ||| | ||| |||||| ||| | || ||| | || | Sbjct 5424226 CGTTCTAGGGCTGCCTCAGGTGGCCAAAT----ACTTTCGCTTTAGTGTCTGCCTGGAGA 5424171 Query 1449 AGATGGTGATCTGGTGGGAGGAGGGCAAGATGACGGCCAAGGTCGTGGAGTCCGCCAAGG 1508 || || | | ||||||||||||||| |||| ||| | || ||||| ||||||| || Sbjct 5424170 AGCTGATCAGCTGGTGGGAGGAGGGAAAGAGGACAGTGAAAACGGTGGAATCCGCCATGG 5424111 Query 1509 CCATTCTCGGCGGCAGCAAGGTGCGCGTGGACCA 1542 || |||| || ||||| || | | | ||||||| Sbjct 5424110 CCTTTCT-GGGGGCAGTGAGCT-CCCTTGGACCA 5424079 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 14985086813445