Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cavia_20aperea_20[genbank_20GCA_5F000688575.1_202014-01-21] 3,131 sequences; 2,716,396,567 total letters Query= NC_004828.1 Length=4694 Score E Sequences producing significant alignments: (Bits) Value seq289 257 5e-65 seq966 86.0 2e-13 >seq289 Length=23972852 Score = 257 bits (284), Expect = 5e-65 Identities = 329/450 (73%), Gaps = 9/450 (2%) Strand=Plus/Plus Query 1195 GGGTGGTGCCAGAAGAAATGGGGCAAGCGAAACACGCTGTGGCTGTTCGGACATGCGACC 1254 || ||||| || ||| | | |||||||||||||| ||||| |||| |||| | |||| Sbjct 10617705 GGCTGGTGTCAAAAGGACTCTGGCAAGCGAAACACCTTGTGGGTGTTTGGACCGGTGACC 10617764 Query 1255 ACCGGCAAGACCAACATCGCGGAGGCTATTGCCCATGCTGTGCCGTTCTATGGATGCGTT 1314 || |||||||||||||||| |||||| | | |||||||| | || || || || || Sbjct 10617765 ACAGGCAAGACCAACATCGTGGAGGCC-TCACTCATGCTGTACGCTTTTACGGGTGTGTA 10617823 Query 1315 AACTGGACCAACGAGAACTTTCCGTTCAACGACTGCGTCGAAAAAATGATTATCTGGTGG 1374 |||||||| || ||||||||||| |||||| |||||||||| || ||| | || |||||| Sbjct 10617824 AACTGGACTAATGAGAACTTTCCCTTCAACAACTGCGTCGACAAGATGCTCATTTGGTGG 10617883 Query 1375 GAGGAGGGCAAAATGACCGCCAAAGTGGTGGAAACAGCCAAGGCGATTCTGGGAGGATCT 1434 |||| ||||| ||||| ||||| || |||||| | |||||||| || |||| || | Sbjct 10617884 AAGGAAGGCAAGATGACGGCCAAGGTAGTGGAATCTGCCAAGGCCATCTTGGGGGGTGCC 10617943 Query 1435 CGGGTGAGAGTGGACCAAAAATGCAAAGCTTCGGTTCCGATCGAACCGACGCCGGTCATT 1494 | | ||||| || ||||| ||| | || || | || || | || |||||||| Sbjct 10617944 AAAGGACGGGTGGATCACAAATGTAAATCCTCCGTACAAATAGATGCCACCCCGGTCATC 10618003 Query 1495 ATTACCAGTAACACCAACATGTGTTATGTCATCGACGGGAACACGACCACGTTCGAGCAT 1554 |||||| | | ||||||| | | ||||||| || ||| |||| | || || || Sbjct 10618004 ATTACCTCCAGTAGCAACATGGGCTGCATCATCGAGGGAAACTCGACGAACTTTGAACAC 10618063 Query 1555 AAGCAGCCGTTGGAGGACAGGATGTTTAAGCTCGAATTGCTGACTCGGTTGCCTGA---- 1610 |||||||||| |||| |||||||||| | ||| ||||||| | || | Sbjct 10618064 GAGCAGCCGTTACAGGATCGGATGTTTAAATTTGAA---CTGACTC-AAAGACTCATACG 10618119 Query 1611 TGACTTTGGTAAGGTGACCAAACAGGAGGT 1640 ||||||||| || | ||||||||||| || Sbjct 10618120 TGACTTTGGAAAAATTACCAAACAGGAAGT 10618149 >seq966 Length=5769529 Score = 86.0 bits (94), Expect = 2e-13 Identities = 122/170 (72%), Gaps = 5/170 (3%) Strand=Plus/Minus Query 1258 GGCAAGACCAACATCGCGGAGGCTATTGCCCATGCTGTGCCGTTCTATGGATGCGTTAAC 1317 || || |||||| ||| | |||||| |||||| ||| | |||||||| || ||| | | Sbjct 5424265 GGAAAAACCAACCTCGAG-AGGCTACTGCCCACGCTTTTCCGTTCTAGGGCTGCCTCAGG 5424207 Query 1318 TGGACCAACGAGAACTTTCCGTTCAACGACTGCGTCGAAAAAATGATTATCTGGTGGGAG 1377 ||| | || |||||| || | | |||| | || || |||| | |||||||||| Sbjct 5424206 TGGCCAAAT----ACTTTCGCTTTAGTGTCTGCCTGGAGAAGCTGATCAGCTGGTGGGAG 5424151 Query 1378 GAGGGCAAAATGACCGCCAAAGTGGTGGAAACAGCCAAGGCGATTCTGGG 1427 ||||| || | ||| | ||| ||||||| | |||| ||| ||||||| Sbjct 5424150 GAGGGAAAGAGGACAGTGAAAACGGTGGAATCCGCCATGGCCTTTCTGGG 5424101 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 14908289443485