Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cavia_20aperea_20[genbank_20GCA_5F000688575.1_202014-01-21] 3,131 sequences; 2,716,396,567 total letters Query= NC_005889.1 Length=4693 Score E Sequences producing significant alignments: (Bits) Value seq289 376 7e-101 >seq289 Length=23972852 Score = 376 bits (416), Expect = 7e-101 Identities = 536/753 (71%), Gaps = 6/753 (1%) Strand=Plus/Plus Query 1023 AATACATGGCGCTGGTAAGCTGGCTGGTGGAACATGGCATCACTTCCGAGAAGCAGTGGA 1082 |||||||||| ||| | | |||||||||||| | | ||||| || ||| |||| |||| Sbjct 10617422 AATACATGGCTCTGATCATCTGGCTGGTGGAGAACCGTATCACGTCTGAGCAGCAATGGA 10617481 Query 1083 TTCAGGAGAATCAGGAGAGCTACCTGTCCTTCAACTCCACGGGAAACTCTCGGAGCCAGA 1142 | ||||||||||| ||||| || ||||| | | | ||||| ||| || | |||| Sbjct 10617482 TCCAGGAGAATCAAGAGAGTTATCTGTCGTATAG-TGGACGGGTAACGCTTGTTCTCAGA 10617540 Query 1143 TTAAAGCCGCGCTTGACAACGCGTCAAAAATTATGAGTCTGACCAAATCTGCCTCAGACT 1202 | || | || | |||| || | || ||||||| |||||||| | || | |||| Sbjct 10617541 TCAAGGTGGCTTTGAACAATGCCTGCAAGATTATGAACCTGACCAAGACAGCAGCGGACT 10617600 Query 1203 ATCTCGTGGGACAGACTGTTCCAGAGGA-CATTTCTGAAAACAGAATCTGGCAGATTTTT 1261 || | ||||| || || || | | |||| |||||||| || | | | ||| Sbjct 10617601 ATTTGGTGGGCAAGGA-GTCCCCTACCAACATTGAGGAAAACAGGATTTATCGCCTGTTT 10617659 Query 1262 GATCTCAACGGCTACGACCCGGCATACGCGGGCTCTGTTCTCTACGGCTGGTG-CACTCG 1320 || || || || || ||||| || | ||| || | || |||||||| || | Sbjct 10617660 AGACTGAATGGATATGATCCGGCCTATGGGGGATCCATACTGCTGGGCTGGTGTCAAAAG 10617719 Query 1321 CGCCTTTGGAAAGAGGAACACCGTCTGGCTGTATGGACCCGCGACCACCGGAAAGACCAA 1380 | || ||| ||| | |||||| | ||| ||| |||||| | |||||| || |||||||| Sbjct 10617720 -GACTCTGGCAAGCGAAACACCTTGTGGGTGTTTGGACCGGTGACCACAGGCAAGACCAA 10617778 Query 1381 CATCGCGGAAGCCATCTCTCACACCGTGCCCTTTTATGGCTGTGTGAACTGGACTAATGA 1440 ||||| ||| ||| || |||| | || | |||||| || ||||| |||||||||||||| Sbjct 10617779 CATCGTGGAGGCC-TCACTCATGCTGTACGCTTTTACGGGTGTGTAAACTGGACTAATGA 10617837 Query 1441 GAACTTNNNNNNNNNNNNNNNNNNNGAAAAAATGTTGATCTGGTGGGAGGAGGGAAAGAT 1500 |||||| || || ||| | || |||||| |||| || ||||| Sbjct 10617838 GAACTTTCCCTTCAACAACTGCGTCGACAAGATGCTCATTTGGTGGAAGGAAGGCAAGAT 10617897 Query 1501 GACCAGCAAGGTGGTGGAACCCGCCAAGGCCATCTTgggggggTCTAGAGTACGAGTGGA 1560 ||| |||||| |||||| | |||||||||||||||||||| | | || ||| ||||| Sbjct 10617898 GACGGCCAAGGTAGTGGAATCTGCCAAGGCCATCTTGGGGGGTGCCAAAGGACGGGTGGA 10617957 Query 1561 TCAAAAATGTAAATCCTCTGTACAAGTAGACTCTACCCCGGTGATTATCACCTCCAATAC 1620 ||| |||||||||||||| |||||| |||| | |||||||| || || ||||||| || Sbjct 10617958 TCACAAATGTAAATCCTCCGTACAAATAGATGCCACCCCGGTCATCATTACCTCCAGTAG 10618017 Query 1621 TAACATGTGTGTGGTGGTGGATGGGAACTCCACGACCTTTGAACACCAGCAGCCGCTGGA 1680 |||||| | | | || || ||||| |||| |||||||||| |||||||| | | Sbjct 10618018 CAACATGGGCTGCATCATCGAGGGAAACTCGACGAACTTTGAACACGAGCAGCCGTTACA 10618077 Query 1681 AGACCGCATGTTCAGATTTGAACTCATGCGGCGGCTCCCGCCAGATTTTGGCAAGATTAC 1740 || || ||||| | ||||||||| | | | ||| | || ||||| || ||||| Sbjct 10618078 GGATCGGATGTTTAAATTTGAACTGACTCAAAGACTCATACGTGACTTTGGAAAAATTAC 10618137 Query 1741 CAAGCAGGAAGTCAAAGACTTTTTTGCTTGGGC 1773 ||| |||||||||||||||||||| || | ||| Sbjct 10618138 CAAACAGGAAGTCAAAGACTTTTTGGCGTAGGC 10618170 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 14905089553070