Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cavia_20aperea_20[genbank_20GCA_5F000688575.1_202014-01-21] 3,131 sequences; 2,716,396,567 total letters Query= NC_006147.2 Length=5132 Score E Sequences producing significant alignments: (Bits) Value seq289 150 6e-33 seq966 80.6 9e-12 >seq289 Length=23972852 Score = 150 bits (166), Expect = 6e-33 Identities = 165/218 (76%), Gaps = 1/218 (0%) Strand=Plus/Plus Query 1553 GGACCTGCGACCACCGGAAAGACCAACATAGCCGAGGCTATTGCCCATGCTGTACCCTTC 1612 ||||| | |||||| || ||||||||||| | ||||| | | |||||||||| ||| Sbjct 10617753 GGACCGGTGACCACAGGCAAGACCAACATCGTGGAGGCC-TCACTCATGCTGTACGCTTT 10617811 Query 1613 TATGGCTGTGTTAACTGGACTAATGAGAACTTCCCATTTAATGACTGCGTTGATAAAATG 1672 || || ||||| |||||||||||||||||||| || || || ||||||| || || ||| Sbjct 10617812 TACGGGTGTGTAAACTGGACTAATGAGAACTTTCCCTTCAACAACTGCGTCGACAAGATG 10617871 Query 1673 CTTATATGGTGGGAGGAGGGAAAAATGACCAATAAAGTAGTGGAATCCGCAAAAGCGATA 1732 || || |||||| |||| || || ||||| || ||||||||||| || || || || Sbjct 10617872 CTCATTTGGTGGAAGGAAGGCAAGATGACGGCCAAGGTAGTGGAATCTGCCAAGGCCATC 10617931 Query 1733 CTgggggggTCTGCTGTACGAGTTGATCAAAAGTGTAA 1770 ||||||| | | ||| || ||||| || ||||| Sbjct 10617932 TTGGGGGGTGCCAAAGGACGGGTGGATCACAAATGTAA 10617969 >seq966 Length=5769529 Score = 80.6 bits (88), Expect = 9e-12 Identities = 129/184 (70%), Gaps = 5/184 (3%) Strand=Plus/Minus Query 1556 CCTGCGACCACCGGAAAGACCAACATAGCCGAGGCTATTGCCCATGCTGTACCCTTCTAT 1615 |||| || || ||||| |||||| | | ||||||| |||||| ||| | || ||||| Sbjct 5424277 CCTGGGATCATGGGAAAAACCAACCTCGA-GAGGCTACTGCCCACGCTTTTCCGTTCTAG 5424219 Query 1616 GGCTGTGTTAACTGGACTAATGAGAACTTCCCATTTAATGACTGCGTTGATAAAATGCTT 1675 ||||| | | ||| | ||| |||| | |||| || |||| | || || || | Sbjct 5424218 GGCTGCCTCAGGTGGCCAAAT----ACTTTCGCTTTAGTGTCTGCCTGGAGAAGCTGATC 5424163 Query 1676 ATATGGTGGGAGGAGGGAAAAATGACCAATAAAGTAGTGGAATCCGCAAAAGCGATACTg 1735 | ||||||||||||||||| | ||| ||| ||||||||||| | || | ||| Sbjct 5424162 AGCTGGTGGGAGGAGGGAAAGAGGACAGTGAAAACGGTGGAATCCGCCATGGCCTTTCTG 5424103 Query 1736 gggg 1739 |||| Sbjct 5424102 GGGG 5424099 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 16309841445255