Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cavia_20aperea_20[genbank_20GCA_5F000688575.1_202014-01-21] 3,131 sequences; 2,716,396,567 total letters Query= NC_006148.1 Length=4432 Score E Sequences producing significant alignments: (Bits) Value seq289 98.7 3e-17 >seq289 Length=23972852 Score = 98.7 bits (108), Expect = 3e-17 Identities = 137/187 (73%), Gaps = 5/187 (3%) Strand=Plus/Plus Query 1269 AAGAACTTTGGCAAGAGAAACACCATCTGGCTGTATGGTCCAGCTACTACCGGCAAAACC 1328 ||| ||| ||||||| |||||||| | ||| ||| ||| || | || || ||||| ||| Sbjct 10617717 AAGGACTCTGGCAAGCGAAACACCTTGTGGGTGTTTGGACCGGTGACCACAGGCAAGACC 10617776 Query 1329 ATCATCGCTCAAGCTATTGCACATGCTGTTAAACTGTTTGCTGGTGTT--AATTGGACTA 1386 | ||||| | || | | |||||||| | || ||| | ||||| || ||||||| Sbjct 10617777 AACATCGTGGAGGCC-TCACTCATGCTGT-ACGCT-TTTACGGGTGTGTAAACTGGACTA 10617833 Query 1387 ATGAAAACTTTCCCTTCTGTAACTGTCCAGGGAAACTGCTTATCTGGTGGGAGGAGGGCA 1446 |||| |||||||||||| ||||| | || |||| || |||||| |||| |||| Sbjct 10617834 ATGAGAACTTTCCCTTCAACAACTGCGTCGACAAGATGCTCATTTGGTGGAAGGAAGGCA 10617893 Query 1447 AGATGAC 1453 ||||||| Sbjct 10617894 AGATGAC 10617900 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 14069918154755