Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cavia_20aperea_20[genbank_20GCA_5F000688575.1_202014-01-21] 3,131 sequences; 2,716,396,567 total letters Query= NC_006152.1 Length=4642 Score E Sequences producing significant alignments: (Bits) Value seq289 444 2e-121 seq966 95.1 4e-16 >seq289 Length=23972852 Score = 444 bits (492), Expect = 2e-121 Identities = 952/1394 (68%), Gaps = 64/1394 (5%) Strand=Plus/Plus Query 404 GAGGAACATCTGCCTGGAATTTCTGACAGCTTTGTGGACTGGGTAACTGGTCAAATT-TG 462 ||||||||| ||||| | ||| | ||||| |||||||||||| | | || |||| || Sbjct 10616808 GAGGAACATTTGCCTAGCATTCCAGACAGATTTGTGGACTGGATTA-TGAACAAAGAATG 10616866 Query 463 GGAGCTGCCTCCAGAGTCAGATTTAAATTTGACTCTGGTTGAACAGCCTCAGTTGACGGT 522 ||| ||||||| ||||||||||| | || | || | || || | ||||| | Sbjct 10616867 GGAATTGCCTCCCGAGTCAGATTTTGACATGGATTTGATCGAGACTCCAAAATTGACTAT 10616926 Query 523 GGCTGATAGAATTCGCCGCGTGTTCCTGTACGAGTGGAACAAATTTTCCAAGCAGGAGTC 582 || || | ||||| | | |||| || || |||| ||| || |||| | || | Sbjct 10616927 CGCGGAAAAAATTCAGAGTGAGTTCTTGGTGGAATGGAGGAAAATTACCAAAAATGATCC 10616986 Query 583 CAAATTCTTTGTGCAGTTTGAAAAGGGATCTGAATATTTTCATCTGCACACGCTTGTGGA 642 |||| ||| | ||||||||||| ||| || || |||| | |||||||| | |||| Sbjct 10616987 GGAATTTTTTATTCAGTTTGAAAAAGGA-CT--ATTTTTTTACCTGCACACACATGTGAG 10617043 Query 643 GACCTCCGGCATCTCTTCCATGGTCCTCGGCCGCTACGTGAGTCAGATTCGCGCCCAGCT 702 ||| ||||| || ||||| | ||| | || ||| ||| || || | || Sbjct 10617044 TACCGATGGCATGAAATCTATGGTGTTGGGCAGATATTTGAATCAAATCTGCCAAAAACT 10617103 Query 703 GGTGAAAG--TG--GTCTTCCAGGGAAT-TGAACCC-CAGATCAACGACTGGGTCGCCAT 756 |||| || || || | ||| || ||| || || |||||| | || | Sbjct 10617104 ----AAAGGCTGACGTGTTTAAA--AATGTGGTCCCACACATTCCTGACTGGATGGCGGT 10617157 Query 757 CACCAAGGTAAAGAAGGGCGGAGCCAATAAGGTGGTGGATTC----TGGGTATATTCCCG 812 || || || | ||| |||||| | || ||||| ||| ||| |||| Sbjct 10617158 GACAAAAACCAAACACAACGGCGCCAATCGGCTGAGGGATTAAAAATGG---TATCCCCG 10617214 Query 813 CCTACCTGCTGCCGAAGGTCCAACCGGAGCTTCAGTGGGCGTGGACAAACCTGGACGAGT 872 ||||||| | || ||| |||||| || | || |||| |||||| || |||| || | Sbjct 10617215 CCTACCTTTTACCCAAGAACCAACCAGAATTGCAATGGGTGTGGACCAATATGGAGGACT 10617274 Query 873 ATAAATTGGCCGCCCTGAATCTGGAGGAGCGCAAACGGCTCGTCGCGCAGTTTCTG---- 928 || |||| || ||| | || ||| ||||| |||| || | | || |||| Sbjct 10617275 ATC------CCGCGCTTAATTTAGAAGAGTGCAAATGGCTGGT-GAG-AGAGTCTGCGGA 10617326 Query 929 GCAGAATCCTCGCAGCGCTCGCAGGAGGCGGCTTCGCAGCG---TGAGTTC---TCGGCT 982 |||| | | | || | |||| | || |||| || |||| | || || Sbjct 10617327 GCAGCAGCGT-GCTG-GCTCACTCGAAAATACTTCTCAAGAATCTGAGCTAAATTCTTCT 10617384 Query 983 GACCCGG-TCATCAAAA-----GCAAGACTTCCCAGA-AATACATGGCGCTCGTCAACTG 1035 || | || ||||| |||| | | ||| | |||||||||| || ||| ||| Sbjct 10617385 GAAGATGCTCCCCAAAACAGGAGCAA-ATGTACCACACAATACATGGCTCTGATCATCTG 10617443 Query 1036 GCTCGTGGAGCACGGCATCACTTCCGAGAAGCAGTGGATCCAGGAAAATCAGGAGAGCTA 1095 ||| |||||| || | ||||| || ||| |||| ||||||||||| ||||| ||||| || Sbjct 10617444 GCTGGTGGAGAACCGTATCACGTCTGAGCAGCAATGGATCCAGGAGAATCAAGAGAGTTA 10617503 Query 1096 CCTCTCCTTCAACTCCACCGGCAACTCTCGGAGCCAGATCAAGGCCGCGCTCGACAACGC 1155 || || | | | || || ||| || | |||||||||| || | |||| || Sbjct 10617504 TCTGTCGTATAG-TGGACGGGTAACGCTTGTTCTCAGATCAAGGTGGCTTTGAACAATGC 10617562 Query 1156 GACCAAAATTATGAGTCTGACAAAAAGCGCGGTGGACTACCTCGTGGG----GAGCTCCG 1211 ||| ||||||| ||||| || | || | |||||| | ||||| ||| || Sbjct 10617563 CTGCAAGATTATGAACCTGACCAAGACAGCAGCGGACTATTTGGTGGGCAAGGAGTCCCC 10617622 Query 1212 TTCCCGAGGACATTTCAAAAAACAGAATCTGGCAAATTTTTGAGA-TGAATGGCTACGAC 1270 | || ||||| ||||||| || | | | ||| ||| ||||||| || || Sbjct 10617623 TACCA----ACATTGAGGAAAACAGGATTTATCGCCTGTTT-AGACTGAATGGATATGAT 10617677 Query 1271 CCGGCCTACGCGGGATCCATCCTCTACGGCTGGTGTCAGCGCTCCTTCAACAAGAGGAAC 1330 |||||||| | ||||||||| || ||||||||||| || |||| | ||| Sbjct 10617678 CCGGCCTATGGGGGATCCATACTGCTGGGCTGGTGTCAAAAGGACTCTGGCAAGCGAAAC 10617737 Query 1331 ACCGTCTGGCTCTACGGACCCGCCACGACCGGCAAGACCAACATCGCGGAGGCCATCGCC 1390 ||| | ||| | | ||||| | || || |||||||||||||||| ||||||| || | Sbjct 10617738 ACCTTGTGGGTGTTTGGACCGGTGACCACAGGCAAGACCAACATCGTGGAGGCC-TCACT 10617796 Query 1391 CACACTGTGCCCTTTTACGGCTGCGTGAACTGGACCAATGAAAACTTTCCCTTTAATGAC 1450 || |||| | ||||||||| || || |||||||| ||||| ||||||||||| || || Sbjct 10617797 CATGCTGTACGCTTTTACGGGTGTGTAAACTGGACTAATGAGAACTTTCCCTTCAACAAC 10617856 Query 1451 TGTGTGGACAAAATGCTCATTTGGTGGGAGGAGGGAAAGATGACCAACAAGGTGGTTGAA 1510 || || ||||| ||||||||||||||| |||| || |||||||| |||||| || ||| Sbjct 10617857 TGCGTCGACAAGATGCTCATTTGGTGGAAGGAAGGCAAGATGACGGCCAAGGTAGTGGAA 10617916 Query 1511 TCCGCCAAGGCCATCCTGGGGGGCTCAAAGGTGCGGGTCGATCAGAAATGTAAATCCTCT 1570 || |||||||||||| ||||||| | || | ||||| ||||| |||||||||||||| Sbjct 10617917 TCTGCCAAGGCCATCTTGGGGGGTGCCAAAGGACGGGTGGATCACAAATGTAAATCCTCC 10617976 Query 1571 GTTCAAATTGATTCTACCCCTGTCATTGTAACTTCCAATACAAACATGTGTGTGGTGGTG 1630 || ||||| ||| | ||||| ||||| | || |||| || |||||| | | | Sbjct 10617977 GTACAAATAGATGCCACCCCGGTCATCATTACCTCCAGTAGCAACATGGGCTGCATCATC 10618036 Query 1631 GATGGGAATTCCACGACCTTTGAACACCAGCAGCCGCTGGAGGACCGCATGTTCAAATTT 1690 || || || || |||| |||||||||| |||||||| | |||| || ||||| |||||| Sbjct 10618037 GAGGGAAACTCGACGAACTTTGAACACGAGCAGCCGTTACAGGATCGGATGTTTAAATTT 10618096 Query 1691 GAACTGACTAAGCGGCTCCCGCCAGATTTTGGCAAGATTACTAAGCAGGAAGTCAAGGAC 1750 ||||||||| | | ||| | || ||||| || ||||| || ||||||||||| ||| Sbjct 10618097 GAACTGACTCAAAGACTCATACGTGACTTTGGAAAAATTACCAAACAGGAAGTCAAAGAC 10618156 Query 1751 TTTTTTGCTTGGGC 1764 ||||| || | ||| Sbjct 10618157 TTTTTGGCGTAGGC 10618170 >seq966 Length=5769529 Score = 95.1 bits (104), Expect = 4e-16 Identities = 125/172 (73%), Gaps = 5/172 (3%) Strand=Plus/Minus Query 1361 GGCAAGACCAACATCGCGGAGGCCATCGCCCACACTGTGCCCTTTTACGGCTGCGTGAAC 1420 || || |||||| ||| | |||| | |||||| || | || || || |||||| | | Sbjct 5424265 GGAAAAACCAACCTCGAG-AGGCTACTGCCCACGCTTTTCCGTTCTAGGGCTGCCTCAGG 5424207 Query 1421 TGGACCAATGAAAACTTTCCCTTTAATGACTGTGTGGACAAAATGCTCATTTGGTGGGAG 1480 ||| | ||| |||||| ||||| || ||| |||| || || ||| ||||||||| Sbjct 5424206 TGGCCAAAT----ACTTTCGCTTTAGTGTCTGCCTGGAGAAGCTGATCAGCTGGTGGGAG 5424151 Query 1481 GAGGGAAAGATGACCAACAAGGTGGTTGAATCCGCCAAGGCCATCCTGGGGG 1532 |||||||||| ||| || ||| |||||||||| |||| | ||||||| Sbjct 5424150 GAGGGAAAGAGGACAGTGAAAACGGTGGAATCCGCCATGGCCTTTCTGGGGG 5424099 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 14741895141905