Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cavia_20aperea_20[genbank_20GCA_5F000688575.1_202014-01-21] 3,131 sequences; 2,716,396,567 total letters Query= NC_006260.1 Length=4721 Score E Sequences producing significant alignments: (Bits) Value seq289 352 9e-94 seq966 82.4 2e-12 >seq289 Length=23972852 Score = 352 bits (390), Expect = 9e-94 Identities = 525/741 (71%), Gaps = 4/741 (1%) Strand=Plus/Plus Query 1003 TACATGGAGCTGGTCGGGTGGCTGGTGGACCGGGGCATCACCTCCGAGAAGCAGTGGATC 1062 ||||||| ||| || ||||||||||| | ||||| || ||| |||| |||||| Sbjct 10617424 TACATGGCTCTGATCATCTGGCTGGTGGAGAACCGTATCACGTCTGAGCAGCAATGGATC 10617483 Query 1063 CAGGAGGACCAGGCCTCGTACATCTCCTTCAACGC-CGCCTCCAACTCGCGGTCCCAGAT 1121 |||||| | || | || | || | | | || | ||| | | || ||||| Sbjct 10617484 CAGGAGAATCAAGAGAGTTATCTGTCGTATAGTGGACGGGT--AACGCTTGTTCTCAGAT 10617541 Query 1122 CAAGGCCGCGCTGGACAATGCCGGCAAGATCATGGCGCTGACCAAATCCGCGCCCGACTA 1181 ||||| || || |||||||| ||||||| ||| |||||||| | || | ||||| Sbjct 10617542 CAAGGTGGCTTTGAACAATGCCTGCAAGATTATGAACCTGACCAAGACAGCAGCGGACTA 10617601 Query 1182 CCTGGTGGGGCCCTCGCTGCCCGCGGACATTAAAACCAACCGCATCTACCGCATCCTGGA 1241 ||||||| | || | ||||| | ||| | || || ||| | | Sbjct 10617602 TTTGGTGGGCAAGGAGTCCCCTACCAACATTGAGGAAAACAGGATTTATCGCCTGTTTAG 10617661 Query 1242 GCTGAACGGGTACGATCCTGCCTACGCCGGCTCCGTCTTTCTCGGCTGGGCCCAGAAAAA 1301 ||||| || || ||||| ||||| | || ||| | | || |||||| || || | Sbjct 10617662 ACTGAATGGATATGATCCGGCCTATGGGGGATCCATACTGCTGGGCTGGTGTCAAAAGGA 10617721 Query 1302 GTTCGGGAAGCGCAACACCATCTGGCTGTTTGGGCCCGCCACCACCGGCAAGACCAACAT 1361 | || ||||| |||||| | ||| ||||||| || | ||||| |||||||||||||| Sbjct 10617722 CTCTGGCAAGCGAAACACCTTGTGGGTGTTTGGACCGGTGACCACAGGCAAGACCAACAT 10617781 Query 1362 TGCGGAAGCCATCGCCCACGCCGTGCCCTTCTACGGCTGCGTCAACTGGACCAATGAGAA 1421 | ||| ||| || | || || || | ||| ||||| || || |||||||| |||||||| Sbjct 10617782 CGTGGAGGCC-TCACTCATGCTGTACGCTTTTACGGGTGTGTAAACTGGACTAATGAGAA 10617840 Query 1422 CTTTCCCTTCAACGATTGCGTCGACAAGATGGTGATCTGGTGGGAGGAGGGCAAGATGAC 1481 ||||||||||||| | ||||||||||||||| | || |||||| |||| ||||||||||| Sbjct 10617841 CTTTCCCTTCAACAACTGCGTCGACAAGATGCTCATTTGGTGGAAGGAAGGCAAGATGAC 10617900 Query 1482 GGCCAAGGTCGTGGAGTCCGCCAAGGCCATTCTCGGCGGCAGCAAGGTGCGCGTGGACCA 1541 ||||||||| ||||| || ||||||||||| | || || ||| | || ||||| || Sbjct 10617901 GGCCAAGGTAGTGGAATCTGCCAAGGCCATCTTGGGGGGTGCCAAAGGACGGGTGGATCA 10617960 Query 1542 AAAGTGCAAGTCGTCCGCCCAGATCGACCCCACCCCCGTGATCGTCACCTCCAACACCAA 1601 || || || || |||| || || || ||||||| || ||| | ||||||| | ||| Sbjct 10617961 CAAATGTAAATCCTCCGTACAAATAGATGCCACCCCGGTCATCATTACCTCCAGTAGCAA 10618020 Query 1602 CATGTGCGCCGTGATTGACGGGAACAGCACCACCTTCGAGCACCAGCAGCCGTTGCAGGA 1661 |||| || | | || || || ||| || | ||| || ||| |||||||||| ||||| Sbjct 10618021 CATGGGCTGCATCATCGAGGGAAACTCGACGAACTTTGAACACGAGCAGCCGTTACAGGA 10618080 Query 1662 CCGGATGTTCAAATTTGAACTCACCCGCCGTCTGGAGCACGACTTTGGCAAGGTGACGAA 1721 |||||||| ||||||||||| || | | || | |||||||| || | || || Sbjct 10618081 TCGGATGTTTAAATTTGAACTGACTCAAAGACTCATACGTGACTTTGGAAAAATTACCAA 10618140 Query 1722 GCAGGAAGTCAAAGAGTTCTT 1742 |||||||||||||| || || Sbjct 10618141 ACAGGAAGTCAAAGACTTTTT 10618161 >seq966 Length=5769529 Score = 82.4 bits (90), Expect = 2e-12 Identities = 120/167 (72%), Gaps = 6/167 (4%) Strand=Plus/Minus Query 1375 GCCCACGCCGTGCCCTTCTACGGCTGCGTCAACTGGACCAATGAGAACTTTCCCTTCAAC 1434 |||||||| | || ||||| |||||| ||| ||| | ||| |||||| ||| | Sbjct 5424239 GCCCACGCTTTTCCGTTCTAGGGCTGCCTCAGGTGGCCAAAT----ACTTTCGCTTTAGT 5424184 Query 1435 GATTGCGTCGACAAGATGGTGATCTGGTGGGAGGAGGGCAAGATGACGGCCAAGGTCGTG 1494 | ||| | || ||| || | | ||||||||||||||| |||| ||| | || ||| Sbjct 5424183 GTCTGCCTGGAGAAGCTGATCAGCTGGTGGGAGGAGGGAAAGAGGACAGTGAAAACGGTG 5424124 Query 1495 GAGTCCGCCAAGGCCATTCTCGGCGGCAGCAAGGTGCGCGTGGACCA 1541 || ||||||| |||| |||| || ||||| || | | | ||||||| Sbjct 5424123 GAATCCGCCATGGCCTTTCT-GGGGGCAGTGAGCT-CCCTTGGACCA 5424079 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 14994686484690