Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cavia_20aperea_20[genbank_20GCA_5F000688575.1_202014-01-21] 3,131 sequences; 2,716,396,567 total letters Query= NC_006261.1 Length=4393 Score E Sequences producing significant alignments: (Bits) Value seq289 325 1e-85 seq966 91.5 4e-15 >seq289 Length=23972852 Score = 325 bits (360), Expect = 1e-85 Identities = 519/741 (70%), Gaps = 4/741 (1%) Strand=Plus/Plus Query 902 TATATGGAGCTGGTCGGGTGGCTGGTGGACCGGGGCATCACCTCCGAGAAGCAGTGGATC 961 || |||| ||| || ||||||||||| | ||||| || ||| |||| |||||| Sbjct 10617424 TACATGGCTCTGATCATCTGGCTGGTGGAGAACCGTATCACGTCTGAGCAGCAATGGATC 10617483 Query 962 CAGGAGGACCAGGCCTCGTACATCTCCTTCAACGC-CGCCTCCAACTCGCGGTCCCAGAT 1020 |||||| | || | || | || | | | || | ||| | | || ||||| Sbjct 10617484 CAGGAGAATCAAGAGAGTTATCTGTCGTATAGTGGACGGGT--AACGCTTGTTCTCAGAT 10617541 Query 1021 CAAGGCCGCGCTGGACAATGCCGGCAAGATCATGGCGCTGACCAAATCCGCGCCCGACTA 1080 ||||| || || |||||||| ||||||| ||| |||||||| | || | ||||| Sbjct 10617542 CAAGGTGGCTTTGAACAATGCCTGCAAGATTATGAACCTGACCAAGACAGCAGCGGACTA 10617601 Query 1081 CCTGGTGGGGCCCTCGCTGCCCGCGGACATTACCCAGAACCGCATCTACCGCATCCTCGC 1140 ||||||| | || | ||||| | ||| | || || ||| | | Sbjct 10617602 TTTGGTGGGCAAGGAGTCCCCTACCAACATTGAGGAAAACAGGATTTATCGCCTGTTTAG 10617661 Query 1141 TCTCAACGGCTACGACCCTGCCTACGCCGGCTCCGTCTTTCTCGGCTGGGCTCAGAAAAA 1200 || || || || || || ||||| | || ||| | | || |||||| ||| || | Sbjct 10617662 ACTGAATGGATATGATCCGGCCTATGGGGGATCCATACTGCTGGGCTGGTGTCAAAAGGA 10617721 Query 1201 GTTCGGGAAACGCAACACCATCTGGCTGTTTGGACCCGCCACCACCGGCAAGACCAACAT 1260 | || || || |||||| | ||| |||||||||| | ||||| |||||||||||||| Sbjct 10617722 CTCTGGCAAGCGAAACACCTTGTGGGTGTTTGGACCGGTGACCACAGGCAAGACCAACAT 10617781 Query 1261 TGCGGAAGCCATCGCCCACGCCGTGCCCTTCTACGGCTGCGTCAACTGGACCAATGAGAA 1320 | ||| ||| || | || || || | ||| ||||| || || |||||||| |||||||| Sbjct 10617782 CGTGGAGGCC-TCACTCATGCTGTACGCTTTTACGGGTGTGTAAACTGGACTAATGAGAA 10617840 Query 1321 CTTTCCCTTCAATGATTGCGTCGACAAGATGGTGATCTGGTGGGAGGAGGGCAAGATGAC 1380 |||||||||||| | ||||||||||||||| | || |||||| |||| ||||||||||| Sbjct 10617841 CTTTCCCTTCAACAACTGCGTCGACAAGATGCTCATTTGGTGGAAGGAAGGCAAGATGAC 10617900 Query 1381 GGCCAAGGTCGTGGAGTCCGCCAAGGCCATTCTCGGCGGCAGCAAGGTGCGCGTGGACCA 1440 ||||||||| ||||| || ||||||||||| | || || ||| | || ||||| || Sbjct 10617901 GGCCAAGGTAGTGGAATCTGCCAAGGCCATCTTGGGGGGTGCCAAAGGACGGGTGGATCA 10617960 Query 1441 AAAGTGCAAGTCGTCCGCCCAGATCGACCCCACCCCCGTGATCGTCACCTCCAACACCAA 1500 || || || || |||| || || || ||||||| || ||| | ||||||| | ||| Sbjct 10617961 CAAATGTAAATCCTCCGTACAAATAGATGCCACCCCGGTCATCATTACCTCCAGTAGCAA 10618020 Query 1501 CATGTGCGCCGTGATTGACGGGAACAGCACCACCTTCGAGCACCAGCAGCCTCTCCAGGA 1560 |||| || | | || || || ||| || | ||| || ||| ||||||| | ||||| Sbjct 10618021 CATGGGCTGCATCATCGAGGGAAACTCGACGAACTTTGAACACGAGCAGCCGTTACAGGA 10618080 Query 1561 CCGGATGTTTAAGTTCGAACTCACCCGCCGTCTGGAGCACGACTTTGGCAAGGTGACAAA 1620 ||||||||||| || ||||| || | | || | |||||||| || | || || Sbjct 10618081 TCGGATGTTTAAATTTGAACTGACTCAAAGACTCATACGTGACTTTGGAAAAATTACCAA 10618140 Query 1621 GCAGGAAGTCAAAGAGTTCTT 1641 |||||||||||||| || || Sbjct 10618141 ACAGGAAGTCAAAGACTTTTT 10618161 >seq966 Length=5769529 Score = 91.5 bits (100), Expect = 4e-15 Identities = 168/241 (70%), Gaps = 8/241 (3%) Strand=Plus/Minus Query 1200 AGTTCGGGAAACGCAACACCATCTGGCTGTTTGGACCCGCCACCACCGGCAAGACCAACA 1259 ||| ||| |||| |||| | || | |||||| || | | || || || |||||| Sbjct 5424311 AGTGCGGAAAACAAAACATCCTCAGT-TGTTTGACCCTGGGATCATGGGAAAAACCAACC 5424253 Query 1260 TTGCGGAAGCCATCGCCCACGCCGTGCCCTTCTACGGCTGCGTCAACTGGACCAATGAGA 1319 | | | | || | |||||||| | || ||||| |||||| ||| ||| | ||| Sbjct 5424252 TCGAG-AGGCTACTGCCCACGCTTTTCCGTTCTAGGGCTGCCTCAGGTGGCCAAAT---- 5424198 Query 1320 ACTTTCCCTTCAATGATTGCGTCGACAAGATGGTGATCTGGTGGGAGGAGGGCAAGATGA 1379 |||||| ||| | || ||| | || ||| || | | ||||||||||||||| |||| || Sbjct 5424197 ACTTTCGCTTTAGTGTCTGCCTGGAGAAGCTGATCAGCTGGTGGGAGGAGGGAAAGAGGA 5424138 Query 1380 CGGCCAAGGTCGTGGAGTCCGCCAAGGCCATTCTCGGCGGCAGCAAGGTGCGCGTGGACC 1439 | | || ||||| ||||||| |||| |||| || ||||| || | | | |||||| Sbjct 5424137 CAGTGAAAACGGTGGAATCCGCCATGGCCTTTCT-GGGGGCAGTGAGCT-CCCTTGGACC 5424080 Query 1440 A 1440 | Sbjct 5424079 A 5424079 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 13945122428570