Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cavia_20aperea_20[genbank_20GCA_5F000688575.1_202014-01-21] 3,131 sequences; 2,716,396,567 total letters Query= NC_006263.1 Length=4682 Score E Sequences producing significant alignments: (Bits) Value seq289 253 6e-64 >seq289 Length=23972852 Score = 253 bits (280), Expect = 6e-64 Identities = 327/449 (73%), Gaps = 7/449 (2%) Strand=Plus/Plus Query 1195 GGGTGGTGCCAGAAGAAATGGGGCAAGCGAAACACGCTGTGGCTGTTCGGACCTGCGACC 1254 || ||||| || ||| | | |||||||||||||| ||||| |||| ||||| | |||| Sbjct 10617705 GGCTGGTGTCAAAAGGACTCTGGCAAGCGAAACACCTTGTGGGTGTTTGGACCGGTGACC 10617764 Query 1255 ACCGGCAAGACCAACATCGCGGAGGCTATTGCCCATGCTGTGCCGTTCTATGGATGCGTT 1314 || |||||||||||||||| |||||| | | |||||||| | || || || || || Sbjct 10617765 ACAGGCAAGACCAACATCGTGGAGGCC-TCACTCATGCTGTACGCTTTTACGGGTGTGTA 10617823 Query 1315 AACTGGACCAACGAGAACTTTCCGTTCAACGACTGCGTCGAAAAGATGATTATCTGGTGG 1374 |||||||| || ||||||||||| |||||| |||||||||| |||||| | || |||||| Sbjct 10617824 AACTGGACTAATGAGAACTTTCCCTTCAACAACTGCGTCGACAAGATGCTCATTTGGTGG 10617883 Query 1375 GAAGAGGGCAAAATGACCGCCAAGGTGGTGGAAACGGCTAAAGCGATTCTGGGAGGATCT 1434 | || ||||| ||||| |||||||| |||||| | || || || || |||| || | Sbjct 10617884 AAGGAAGGCAAGATGACGGCCAAGGTAGTGGAATCTGCCAAGGCCATCTTGGGGGGTGCC 10617943 Query 1435 CGGGTGAGAGTGGACCAAAAATGCAAAGCTTCGGTTCCGATCGAACCGACGCCGGTCATT 1494 | | ||||| || ||||| ||| | || || | || || | || |||||||| Sbjct 10617944 AAAGGACGGGTGGATCACAAATGTAAATCCTCCGTACAAATAGATGCCACCCCGGTCATC 10618003 Query 1495 ATTACCAGTAACACCAACATGTGTTATGTCATCGACGGGAACACGACTACGTTCGAGCAT 1554 |||||| | | ||||||| | | ||||||| || ||| |||| | || || || Sbjct 10618004 ATTACCTCCAGTAGCAACATGGGCTGCATCATCGAGGGAAACTCGACGAACTTTGAACAC 10618063 Query 1555 AAGCAGCCGTTGGAGGACAGGATGTTTAAGCTCGAGCTGTTGACTCGTTTACCC---GAT 1611 |||||||||| |||| |||||||||| | || | |||||| || | | Sbjct 10618064 GAGCAGCCGTTACAGGATCGGATGTTTAAATTTGAAC---TGACTCAAAGACTCATACGT 10618120 Query 1612 GACTTTGGTAAGGTGACCAAACAGGAGGT 1640 |||||||| || | ||||||||||| || Sbjct 10618121 GACTTTGGAAAAATTACCAAACAGGAAGT 10618149 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 14869890758505