Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cavia_20aperea_20[genbank_20GCA_5F000688575.1_202014-01-21] 3,131 sequences; 2,716,396,567 total letters Query= NC_014468.1 Length=4286 Score E Sequences producing significant alignments: (Bits) Value seq289 241 4e-60 >seq289 Length=23972852 Score = 241 bits (266), Expect = 4e-60 Identities = 467/691 (68%), Gaps = 8/691 (1%) Strand=Plus/Plus Query 843 CAGAATACATGGCGCTCGTCAGGTGGCTCGTGGACAACGGCATCGCGACCGAGCGCGAGT 902 || |||||||||| || ||| ||||| ||||| ||| | ||| || | |||| | | Sbjct 10617419 CACAATACATGGCTCTGATCATCTGGCTGGTGGAGAACCGTATCACGTCTGAGCAGCAAT 10617478 Query 903 GGATGCGCGAGGACTCGGACGGGTACCTGAGCTACAACGCCACGGGCGCCACGCGCGCCC 962 |||| | ||| | || | || ||| || | | ||||| | | | | | Sbjct 10617479 GGATCCAGGAGAATCAAGAGAGTTATCTGTCGTATAGTGG-ACGGGTAACGCTTGTTCTC 10617537 Query 963 AGATCAAGGCCGCGCTCGACAACGCGGCCCGCATCATGGTCAAC---ACGAAGACGGCCG 1019 ||||||||| || | |||| || | ||| || | ||| || ||||| || | Sbjct 10617538 AGATCAAGGTGGCTTTGAACAATGC---CTGCAAGATTATGAACCTGACCAAGACAGCAG 10617594 Query 1020 CCGACTACCTGGTCGGCAGGAACCCGCCCCTCGACGTGGAGGACAACAGGATCTACCGGC 1079 | ||||| |||| |||| | | | || | || | ||||| |||||||| || || | Sbjct 10617595 CGGACTATTTGGTGGGCAAGGAGTCCCCTACCAACATTGAGGAAAACAGGATTTATCGCC 10617654 Query 1080 TGTTTCGCATGAACGGCTACGACCCCGCCTACGCGGGCAGCGTGCTGCTCGGCTGGTGCC 1139 ||||| | |||| || || || || ||||| | ||| | | ||||| |||||||| | Sbjct 10617655 TGTTTAGACTGAATGGATATGATCCGGCCTATGGGGGATCCATACTGCTGGGCTGGTGTC 10617714 Query 1140 GCACCGGCTTCGGCAAGCGCAACACCGTCTGGCTCTTCGGGCCGGCCACGACCGGCAAGA 1199 | | || |||||||| |||||| | ||| | || || |||| || || ||||||| Sbjct 10617715 AAAAGGACTCTGGCAAGCGAAACACCTTGTGGGTGTTTGGACCGGTGACCACAGGCAAGA 10617774 Query 1200 CGAACCTCGCCGAGGCCATCAGCCACTCGGTGCCCTTCTACGGCTGCGTCAACTGGACCA 1259 | ||| ||| |||||| ||| || | || | ||| ||||| || || |||||||| | Sbjct 10617775 CCAACATCGTGGAGGCC-TCACTCATGCTGTACGCTTTTACGGGTGTGTAAACTGGACTA 10617833 Query 1260 ACGAGAACTTCCCCTTCAACGACTGCGTGGACAAGATGATCATCTGGTGGGAGGAGGGCA 1319 | |||||||| ||||||||| ||||||| ||||||||| |||| |||||| |||| |||| Sbjct 10617834 ATGAGAACTTTCCCTTCAACAACTGCGTCGACAAGATGCTCATTTGGTGGAAGGAAGGCA 10617893 Query 1320 AGATGACGTCCAAGGTCGTCGAGAGCGCCAAGGCCATCCTCGGCGGCAGCAAGGTGCGCG 1379 |||||||| ||||||| || || |||||||||||| | || || ||| | || | Sbjct 10617894 AGATGACGGCCAAGGTAGTGGAATCTGCCAAGGCCATCTTGGGGGGTGCCAAAGGACGGG 10617953 Query 1380 TCGACCAGAAGTGCAAGAACTCGCAGCAGATCGAGCCCACGCCCGTCATNNNNNNNNNNN 1439 | || || || || || ||| || || || |||| || ||||| Sbjct 10617954 TGGATCACAAATGTAAATCCTCCGTACAAATAGATGCCACCCCGGTCATCATTACCTCCA 10618013 Query 1440 NNNNNNACATGTGCGAGGTCGTCGACGGGAACTCGACCACGTTCGAGCACCGGCAGCCGC 1499 ||||| || || |||| || |||||||| | || || ||| ||||||| Sbjct 10618014 GTAGCAACATGGGCTGCATCATCGAGGGAAACTCGACGAACTTTGAACACGAGCAGCCGT 10618073 Query 1500 TCGAGGACAGGATGTTCAAGTTCGAGCTCAC 1530 | |||| ||||||| || || || || || Sbjct 10618074 TACAGGATCGGATGTTTAAATTTGAACTGAC 10618104 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 13602734154165