Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cavia_20aperea_20[genbank_20GCA_5F000688575.1_202014-01-21] 3,131 sequences; 2,716,396,567 total letters Query= NC_024888.1 Length=4733 Score E Sequences producing significant alignments: (Bits) Value seq98 176 1e-40 >seq98 Length=1295472 Score = 176 bits (194), Expect = 1e-40 Identities = 249/346 (72%), Gaps = 3/346 (1%) Strand=Plus/Plus Query 1134 AAAAGTCTACCATGCAATAATGTGCTGCCTTAACAAACAAATGGGCAAAAGAAATACCAT 1193 ||||||| |||||||| | ||||| || ||||| ||| | |||||| |||| || | Sbjct 79633 AAAAGTCATTCATGCAATCACATGCTGTCTAAACAAGCAACTAGGCAAATGAAACACAGT 79692 Query 1194 CTTACTCTGTGGACCTGCAAGCACAGGAAAAAGCCTACTAGCTCAAAAAATAGCAAAATT 1253 ||||| ||| ||| | ||||||||| ||| || | | || ||||| | || Sbjct 79693 TTTACTGCAAGGAAATGCTAACACAGGAAAGAGCGTAATCACACAGAAAATTTTGAGGTT 79752 Query 1254 AGTTGGTAACACAGGCTGCTACAATCCAAGCAATGCCAACTTCCCATTCAATGACTG-TG 1312 |||||||| || |||||||||||| | || ||||| || || |||||||| || Sbjct 79753 GGTTGGTAATGTTGGGTGCTACAATCCAGGAGATATTAACTTTCCTTT-AATGACTGCTG 79811 Query 1313 TAAACAAAAACCTAATCTGGATAGAAGAAGCAGGCAACCTAGGCACTCAAGTTAACTCTT 1372 | | ||| || ||| |||||||||||||| || || |||| ||||| ||| | Sbjct 79812 CAGA-AAAGACATAACTTGGATAGAAGAAGCTGGAAATTTAGGGCAGCAAGTAAACCAAT 79870 Query 1373 TCAAAGCCATCATGAGTGGCCAAGCAATCAGACTTGACCAAAAAGGCAAAGGCAGCAAAT 1432 |||| || |||||| || || || |||||||| |||||| | ||||| ||||||| Sbjct 79871 TCAAGGCAATCATGTCAGGGCACATCATTAGACTTGATCAAAAAAGGAAAGGTAGCAAAT 79930 Query 1433 CAATTGAACCAACTCCAGTAATCATGACAACCAATGAAGACATCAC 1478 | ||||||| ||| |||||||||| || | || ||| ||||| || Sbjct 79931 CCATTGAACTAACATCAGTAATCATAACTAGCAGTGAGGACATTAC 79976 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 15033085169670