Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cavia_20aperea_20[genbank_20GCA_5F000688575.1_202014-01-21] 3,131 sequences; 2,716,396,567 total letters Query= NC_026815.1 Length=4613 Score E Sequences producing significant alignments: (Bits) Value seq98 228 2e-56 >seq98 Length=1295472 Score = 228 bits (252), Expect = 2e-56 Identities = 281/383 (73%), Gaps = 1/383 (0%) Strand=Plus/Plus Query 1200 AAAGTATTTCATGCAATGATGTGCTGTCTAAACAAACAAATGGGCAAAAGAAACACAATC 1259 ||||| |||||||||| | |||||||||||||| ||| | |||||| |||||||| | Sbjct 79634 AAAGTCATTCATGCAATCACATGCTGTCTAAACAAGCAACTAGGCAAATGAAACACAGTT 79693 Query 1260 TTACTTTGTGGTCCAGCAAGTACTGGAAAAAGCCTAATAGCACAAAAAATTGCTCAATTG 1319 ||||| || || | || ||||| ||| |||| |||| |||||| ||| Sbjct 79694 TTACTGCAAGGAAATGCTAACACAGGAAAGAGCGTAATCACACAGAAAATTTTGAGGTTG 79753 Query 1320 GTTGGTAATGTAGGATGCTACAATCCAAGCAATGTTAACTTTCCATTCAACGATTGTAGC 1379 ||||||||||| || |||||||||||| | || |||||||||| || || || || || Sbjct 79754 GTTGGTAATGTTGGGTGCTACAATCCAGGAGATATTAACTTTCCTTT-AATGACTGCTGC 79812 Query 1380 AACAAAAACCTAATATGGATAGAAGAAGCAGGAAACTTTGGAACTCAAGTAAACCAATTT 1439 | ||| || ||| |||||||||||||| ||||| || || |||||||||||||| Sbjct 79813 AGAAAAGACATAACTTGGATAGAAGAAGCTGGAAATTTAGGGCAGCAAGTAAACCAATTC 79872 Query 1440 AAAGCAATCATGAGTGGCCAAGCAATTAGACTAGACCAAAAAGGCAAAGGTAGCAAAACC 1499 || ||||||||| || || |||||||| || |||||| | |||||||||||| || Sbjct 79873 AAGGCAATCATGTCAGGGCACATCATTAGACTTGATCAAAAAAGGAAAGGTAGCAAATCC 79932 Query 1500 ATCGAACCAACTCCAGTTATAATGACAACAAATGAAGACATAACAAGAGTTGTGGTAGGG 1559 || |||| ||| |||| || || || | | ||| ||||| || ||| | | Sbjct 79933 ATTGAACTAACATCAGTAATCATAACTAGCAGTGAGGACATTACTGTTGTTAGAATTGAA 79992 Query 1560 TCTGAACTTAGACCAGAACATAA 1582 | | || ||||||||||||| || Sbjct 79993 TGTAAAATTAGACCAGAACACAA 80015 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 14649098319870