Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cavia_20aperea_20[genbank_20GCA_5F000688575.1_202014-01-21] 3,131 sequences; 2,716,396,567 total letters Query= NC_028650.1 Length=4634 Score E Sequences producing significant alignments: (Bits) Value seq98 205 3e-49 >seq98 Length=1295472 Score = 205 bits (226), Expect = 3e-49 Identities = 256/347 (74%), Gaps = 3/347 (1%) Strand=Plus/Plus Query 1307 AAAAGTATTTCATGCAATTATGTGCTGTCTAAACAAACAGATGGGAAAAAGAAACACAAT 1366 |||||| |||||||||| | |||||||||||||| || | || ||| |||||||| | Sbjct 79633 AAAAGTCATTCATGCAATCACATGCTGTCTAAACAAGCAACTAGGCAAATGAAACACAGT 79692 Query 1367 TCTACTTTGTGGTCCAGCAAGTACAGGAAAAAGCTTACTAGCACAAAAAATAGCTCAGTT 1426 | |||| || || | |||||||| ||| || | |||| ||||| ||| Sbjct 79693 TTTACTGCAAGGAAATGCTAACACAGGAAAGAGCGTAATCACACAGAAAATTTTGAGGTT 79752 Query 1427 AGTTGGAAATGTAGGTTGCTACAACGCTAGCAATGTAAACTTTCCATTCAATGATTGTAG 1486 ||||| ||||| || |||||||| | | || | |||||||| || ||||| || | Sbjct 79753 GGTTGGTAATGTTGGGTGCTACAATCCAGGAGATATTAACTTTCCTTT-AATGACTGCTG 79811 Query 1487 CAACAAAAACCTAATATGGATAGAAGAAGCAGGAAACTTTGGAACTCAAGTAAACCAATT 1546 || ||| || ||| |||||||||||||| ||||| || || |||||||||||||| Sbjct 79812 CAGAAAAGACATAACTTGGATAGAAGAAGCTGGAAATTTAGGGCAGCAAGTAAACCAATT 79871 Query 1547 CAAAGCAATCATGAGTGGTCA-ATCAATCAGACTAGACCAAAAAGGCAAAGGCAGCAAAA 1605 ||| ||||||||| || || ||| || ||||| || |||||| | ||||| |||||| Sbjct 79872 CAAGGCAATCATGTCAGGGCACATC-ATTAGACTTGATCAAAAAAGGAAAGGTAGCAAAT 79930 Query 1606 CCATAGAACCAACTCCAGTAATTATGACCACAAATGAAGACATTACT 1652 |||| |||| ||| ||||||| || || | | ||| ||||||||| Sbjct 79931 CCATTGAACTAACATCAGTAATCATAACTAGCAGTGAGGACATTACT 79977 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 14716296018585