Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cavia_20aperea_20[genbank_20GCA_5F000688575.1_202014-01-21] 3,131 sequences; 2,716,396,567 total letters Query= NC_029797.1 Length=4765 Score E Sequences producing significant alignments: (Bits) Value seq98 223 1e-54 >seq98 Length=1295472 Score = 223 bits (246), Expect = 1e-54 Identities = 282/384 (73%), Gaps = 3/384 (1%) Strand=Plus/Plus Query 1165 AAAGTATTCCATGCAATCATGTGCTGTCTCAACAAACAAATGGGCAAAAGAAACACCATT 1224 ||||| | |||||||||| |||||||| ||||| ||| | |||||| ||||||| || Sbjct 79634 AAAGTCATTCATGCAATCACATGCTGTCTAAACAAGCAACTAGGCAAATGAAACACAGTT 79693 Query 1225 CTACTGTGTGGGCCTGCAAGCACTGGCAAAAGCCTAATAGCACAAAAAATATGCCAACTG 1284 ||||| || ||| | ||| || || ||| |||| |||| ||||| | || Sbjct 79694 TTACTGCAAGGAAATGCTAACACAGGAAAGAGCGTAATCACACAGAAAATTTTGAGGTTG 79753 Query 1285 GTTGGTAATGTTGGTTGCTACAATGCCTCAAATGTAAACTTTCCTTTCAATGACTGCAGC 1344 |||||||||||||| ||||||||| | | || | ||||||||||| ||||||||| || Sbjct 79754 GTTGGTAATGTTGGGTGCTACAATCCAGGAGATATTAACTTTCCTTT-AATGACTGCTGC 79812 Query 1345 AACAAAAATATAATCTGGGTAGAAGAAGCTGGCAACTTTGGAGGCCAAGTAAACCAATTC 1404 | ||| | |||| ||| ||||||||||||| || || || ||||||||||||||| Sbjct 79813 AGAAAAGACATAACTTGGATAGAAGAAGCTGGAAATTTAGGGCAGCAAGTAAACCAATTC 79872 Query 1405 AAAACAATCATGAGTGGCCA-ATCAATCAGACTTGACCAAAAAGGAAAAGGCAGTAAAGA 1463 || |||||||| || || ||| || |||||||| |||||| | ||||| || ||| Sbjct 79873 AAGGCAATCATGTCAGGGCACATC-ATTAGACTTGATCAAAAAAGGAAAGGTAGCAAATC 79931 Query 1464 AATCCAACCAACTCCAGTCATAATGACTACAAATGAAGACATAACCAAAGTAATGATAGG 1523 || ||| ||| |||| || || |||| | ||| ||||| || || | || | Sbjct 79932 CATTGAACTAACATCAGTAATCATAACTAGCAGTGAGGACATTACTGTTGTTAGAATTGA 79991 Query 1524 ATGTGAACTCAAACCAGAACACaa 1547 |||| || | | |||||||||||| Sbjct 79992 ATGTAAAATTAGACCAGAACACAA 80015 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 15135481662950