Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cavia_20aperea_20[genbank_20GCA_5F000688575.1_202014-01-21] 3,131 sequences; 2,716,396,567 total letters Query= NC_030837.1 Length=4639 Score E Sequences producing significant alignments: (Bits) Value seq98 188 2e-44 >seq98 Length=1295472 Score = 188 bits (208), Expect = 2e-44 Identities = 267/374 (71%), Gaps = 1/374 (0%) Strand=Plus/Plus Query 1267 CATGCAATGAGCTGTTGCCTTAACAAACAACTAGGCAAACGAAACACAATCCTACTATGT 1326 |||||||| | || || || ||||| |||||||||||| |||||||| | |||| Sbjct 79643 CATGCAATCACATGCTGTCTAAACAAGCAACTAGGCAAATGAAACACAGTTTTACTGCAA 79702 Query 1327 GGACCTGCAAGTACAGGCAAAAGCCTACTAGCACAAGAAATAGCAAAACTAGTTGGTAAT 1386 ||| ||| | ||||| || ||| || | |||| |||| | | ||||||||| Sbjct 79703 GGAAATGCTAACACAGGAAAGAGCGTAATCACACAGAAAATTTTGAGGTTGGTTGGTAAT 79762 Query 1387 GTTGGATGCTATAATGCAGCAAATCAAAACTTTCCATTCAATGACTGTAGCAACAAAAAC 1446 ||||| ||||| ||| ||| | || |||||||| || |||||||| ||| ||| || Sbjct 79763 GTTGGGTGCTACAATCCAGGAGATATTAACTTTCCTTT-AATGACTGCTGCAGAAAAGAC 79821 Query 1447 CTAATCTGGGTAGAAGAAGCTGGTAACTTTGGTGTACAAGTAAACCAATTTAAAGCAATT 1506 ||| ||| ||||||||||||| || || || |||||||||||||| || ||||| Sbjct 79822 ATAACTTGGATAGAAGAAGCTGGAAATTTAGGGCAGCAAGTAAACCAATTCAAGGCAATC 79881 Query 1507 ATGAGTGGCCAGGCAATCAGACTAGACCAAAAAGGCAAAGGCAGCAAATCAATTGAACCA 1566 ||| || || || ||||| || |||||| | ||||| |||||||| ||||||| | Sbjct 79882 ATGTCAGGGCACATCATTAGACTTGATCAAAAAAGGAAAGGTAGCAAATCCATTGAACTA 79941 Query 1567 ACTCCAGTCATTATGACTACTAATGAAGATATCACAAGAGTCATGGTTGGTTCTGAACTA 1626 || |||| || || |||| | ||| || || || || | ||| | | || | Sbjct 79942 ACATCAGTAATCATAACTAGCAGTGAGGACATTACTGTTGTTAGAATTGAATGTAAAATT 80001 Query 1627 AAACCAGAACACAA 1640 | |||||||||||| Sbjct 80002 AGACCAGAACACAA 80015 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 14732295470660