Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Cavia_20porcellus_20[refseq_20GCF_5F000151735.1_202008-03-03]
3,144 sequences; 2,723,219,641 total letters
Query= NC_001401.2
Length=4679
Score E
Sequences producing significant alignments: (Bits) Value
seq3108 379 6e-102
seq3047 82.4 2e-12
>seq3108
Length=23989115
Score = 379 bits (420), Expect = 6e-102
Identities = 532/741 (72%), Gaps = 4/741 (1%)
Strand=Plus/Plus
Query 990 TACATGGAGCTGGTCGGGTGGCTCGTGGACAAGGGGATTACCTCGGAGAAGCAGTGGATC 1049
||||||| ||| || ||||| ||||| || | || || || ||| |||| ||||||
Sbjct 10624400 TACATGGCTCTGATCATCTGGCTGGTGGAGAACCGTATCACGTCTGAGCAGCAATGGATC 10624459
Query 1050 CAGGAGGACCAGGCCTCATACATCTCCTTCAATGCGGCCTCCAACTCGCGGTCCCAAATC 1109
|||||| | || | || | || | | || | | ||| | | || || |||
Sbjct 10624460 CAGGAGAATCAAGAGAGTTATCTGTCGTATAGTG-GACGGGTAACGCTTGTTCTCAGATC 10624518
Query 1110 AAGGCTGCCTTGGACAATGCGGGAAAGATTATGAGCCTGACTAAAACCGCCCCCGACTAC 1169
|||| || ||| ||||||| | |||||||||| |||||| || || || | |||||
Sbjct 10624519 AAGGTGGCTTTGAACAATGCCTGCAAGATTATGAACCTGACCAAGACAGCAGCGGACTAT 10624578
Query 1170 CTGGTGGGCCAGCAGCCCGTGGAGGACATTTCCAGCAATCGGATTTATAAAATTTTGGAA 1229
|||||||| || || || ||||| || |||||||| | || |
Sbjct 10624579 TTGGTGGGCAAGGAGTCCCCTACCAACATTGAGGAAAACAGGATTTATCGCCTGTTTAGA 10624638
Query 1230 CTAAACGGGTACGATCCCCAATATGCGGCTTCCGTCTTTCTGGGATGG-GCCACGAAAAA 1288
|| || || || ||||| |||| || ||| | | ||||| ||| | || || |
Sbjct 10624639 CTGAATGGATATGATCCGGCCTATGGGGGATCCATACTGCTGGGCTGGTGTCAA-AAGGA 10624697
Query 1289 GTTCGGCAAGAGGAACACCATCTGGCTGTTTGGGCCTGCAACTACCGGGAAGACCAACAT 1348
| |||||| | |||||| | ||| ||||||| || | || || || |||||||||||
Sbjct 10624698 CTCTGGCAAGCGAAACACCTTGTGGGTGTTTGGACCGGTGACCACAGGCAAGACCAACAT 10624757
Query 1349 CGCGGAGGCCATAGCCCACACTGTGCCCTTCTACGGGTGCGTAAACTGGACCAATGAGAA 1408
|| |||||| || || || |||| | ||| |||||||| ||||||||||| ||||||||
Sbjct 10624758 CGTGGAGGC-ATCGCTCATGCTGTACGCTTTTACGGGTGTGTAAACTGGACTAATGAGAA 10624816
Query 1409 CTTTCCCTTCAACGACTGTGTCGACAAGATGGTGATCTGGTGGGAGGAGGGGAAGATGAC 1468
||||||||||||| |||| |||||||||||| | || |||||| |||| || ||||||||
Sbjct 10624817 CTTTCCCTTCAACAACTGCGTCGACAAGATGCTCATTTGGTGGAAGGAAGGCAAGATGAC 10624876
Query 1469 CGCCAAGGTCGTGGAGTCGGCCAAAGCCATTCTCGGAGGAAGCAAGGTGCGCGTGGACCA 1528
|||||||| ||||| || || || ||||| | || || ||| | || ||||| ||
Sbjct 10624877 GGCCAAGGTAGTGGAATCTGCTAAGGCCATCTTGGGGGGTGCCAAAGGACGGGTGGATCA 10624936
Query 1529 GAAATGCAAGTCCTCGGCCCAGATAGACCCGACTCCCGTGATCGTCACCTCCAACACCAA 1588
||||| || ||||| | || ||||| | || || || ||| | ||||||| | |||
Sbjct 10624937 CAAATGTAAATCCTCCGTACAAATAGATGCCACCCCGGTCATCATTACCTCCAGTAGCAA 10624996
Query 1589 CATGTGCGCCGTGATTGACGGGAACTCAACGACCTTCGAACACCAGCAGCCGTTGCAAGA 1648
|||| || | | || || || ||||| |||| ||| |||||| |||||||||| || ||
Sbjct 10624997 CATGGGCTGCATCATCGAGGGAAACTCGACGAACTTTGAACACGAGCAGCCGTTACAGGA 10625056
Query 1649 CCGGATGTTCAAATTTGAACTCACCCGCCGTCTGGATCATGACTTTGGGAAGGTCACCAA 1708
|||||||| ||||||||||| || | | || | ||||||||| || | |||||
Sbjct 10625057 TCGGATGTTTAAATTTGAACTGACTCAAAGACTCATACGTGACTTTGGAAAAATTACCAA 10625116
Query 1709 GCAGGAAGTCAAAGACTTTTT 1729
||||||||||||||||||||
Sbjct 10625117 ACAGGAAGTCAAAGACTTTTT 10625137
>seq3047
Length=5774023
Score = 82.4 bits (90), Expect = 2e-12
Identities = 121/170 (71%), Gaps = 5/170 (3%)
Strand=Plus/Minus
Query 1335 GGGAAGACCAACATCGCGGAGGCCATAGCCCACACTGTGCCCTTCTACGGGTGCGTAAAC 1394
|| || |||||| ||||| |||| | |||||| || | || ||||| || ||| | |
Sbjct 5428568 GGAAAAACCAACCTCGCG-AGGCTACTGCCCACGCTTTTCCGTTCTAGGGCTGCCTCAGG 5428510
Query 1395 TGGACCAATGAGAACTTTCCCTTCAACGACTGTGTCGACAAGATGGTGATCTGGTGGGAG 1454
||| | ||| |||||| ||||| | ||| | || ||| || | | ||||||||||
Sbjct 5428509 TGGCCAAAT----ACTTTCGCTTCAGTGTCTGCCTGGAGAAGCTGATCAGCTGGTGGGAG 5428454
Query 1455 GAGGGGAAGATGACCGCCAAGGTCGTGGAGTCGGCCAAAGCCATTCTCGG 1504
||||| |||| ||| | || ||||| || ||||| ||| |||| ||
Sbjct 5428453 GAGGGAAAGAGGACAGTGAAAACGGTGGAATCCGCCAAGGCCTTTCTGGG 5428404
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 14860288974240
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |