Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cavia_20porcellus_20[refseq_20GCF_5F000151735.1_202008-03-03] 3,144 sequences; 2,723,219,641 total letters Query= NC_001401.2 Length=4679 Score E Sequences producing significant alignments: (Bits) Value seq3108 379 6e-102 seq3047 82.4 2e-12 >seq3108 Length=23989115 Score = 379 bits (420), Expect = 6e-102 Identities = 532/741 (72%), Gaps = 4/741 (1%) Strand=Plus/Plus Query 990 TACATGGAGCTGGTCGGGTGGCTCGTGGACAAGGGGATTACCTCGGAGAAGCAGTGGATC 1049 ||||||| ||| || ||||| ||||| || | || || || ||| |||| |||||| Sbjct 10624400 TACATGGCTCTGATCATCTGGCTGGTGGAGAACCGTATCACGTCTGAGCAGCAATGGATC 10624459 Query 1050 CAGGAGGACCAGGCCTCATACATCTCCTTCAATGCGGCCTCCAACTCGCGGTCCCAAATC 1109 |||||| | || | || | || | | || | | ||| | | || || ||| Sbjct 10624460 CAGGAGAATCAAGAGAGTTATCTGTCGTATAGTG-GACGGGTAACGCTTGTTCTCAGATC 10624518 Query 1110 AAGGCTGCCTTGGACAATGCGGGAAAGATTATGAGCCTGACTAAAACCGCCCCCGACTAC 1169 |||| || ||| ||||||| | |||||||||| |||||| || || || | ||||| Sbjct 10624519 AAGGTGGCTTTGAACAATGCCTGCAAGATTATGAACCTGACCAAGACAGCAGCGGACTAT 10624578 Query 1170 CTGGTGGGCCAGCAGCCCGTGGAGGACATTTCCAGCAATCGGATTTATAAAATTTTGGAA 1229 |||||||| || || || ||||| || |||||||| | || | Sbjct 10624579 TTGGTGGGCAAGGAGTCCCCTACCAACATTGAGGAAAACAGGATTTATCGCCTGTTTAGA 10624638 Query 1230 CTAAACGGGTACGATCCCCAATATGCGGCTTCCGTCTTTCTGGGATGG-GCCACGAAAAA 1288 || || || || ||||| |||| || ||| | | ||||| ||| | || || | Sbjct 10624639 CTGAATGGATATGATCCGGCCTATGGGGGATCCATACTGCTGGGCTGGTGTCAA-AAGGA 10624697 Query 1289 GTTCGGCAAGAGGAACACCATCTGGCTGTTTGGGCCTGCAACTACCGGGAAGACCAACAT 1348 | |||||| | |||||| | ||| ||||||| || | || || || ||||||||||| Sbjct 10624698 CTCTGGCAAGCGAAACACCTTGTGGGTGTTTGGACCGGTGACCACAGGCAAGACCAACAT 10624757 Query 1349 CGCGGAGGCCATAGCCCACACTGTGCCCTTCTACGGGTGCGTAAACTGGACCAATGAGAA 1408 || |||||| || || || |||| | ||| |||||||| ||||||||||| |||||||| Sbjct 10624758 CGTGGAGGC-ATCGCTCATGCTGTACGCTTTTACGGGTGTGTAAACTGGACTAATGAGAA 10624816 Query 1409 CTTTCCCTTCAACGACTGTGTCGACAAGATGGTGATCTGGTGGGAGGAGGGGAAGATGAC 1468 ||||||||||||| |||| |||||||||||| | || |||||| |||| || |||||||| Sbjct 10624817 CTTTCCCTTCAACAACTGCGTCGACAAGATGCTCATTTGGTGGAAGGAAGGCAAGATGAC 10624876 Query 1469 CGCCAAGGTCGTGGAGTCGGCCAAAGCCATTCTCGGAGGAAGCAAGGTGCGCGTGGACCA 1528 |||||||| ||||| || || || ||||| | || || ||| | || ||||| || Sbjct 10624877 GGCCAAGGTAGTGGAATCTGCTAAGGCCATCTTGGGGGGTGCCAAAGGACGGGTGGATCA 10624936 Query 1529 GAAATGCAAGTCCTCGGCCCAGATAGACCCGACTCCCGTGATCGTCACCTCCAACACCAA 1588 ||||| || ||||| | || ||||| | || || || ||| | ||||||| | ||| Sbjct 10624937 CAAATGTAAATCCTCCGTACAAATAGATGCCACCCCGGTCATCATTACCTCCAGTAGCAA 10624996 Query 1589 CATGTGCGCCGTGATTGACGGGAACTCAACGACCTTCGAACACCAGCAGCCGTTGCAAGA 1648 |||| || | | || || || ||||| |||| ||| |||||| |||||||||| || || Sbjct 10624997 CATGGGCTGCATCATCGAGGGAAACTCGACGAACTTTGAACACGAGCAGCCGTTACAGGA 10625056 Query 1649 CCGGATGTTCAAATTTGAACTCACCCGCCGTCTGGATCATGACTTTGGGAAGGTCACCAA 1708 |||||||| ||||||||||| || | | || | ||||||||| || | ||||| Sbjct 10625057 TCGGATGTTTAAATTTGAACTGACTCAAAGACTCATACGTGACTTTGGAAAAATTACCAA 10625116 Query 1709 GCAGGAAGTCAAAGACTTTTT 1729 |||||||||||||||||||| Sbjct 10625117 ACAGGAAGTCAAAGACTTTTT 10625137 >seq3047 Length=5774023 Score = 82.4 bits (90), Expect = 2e-12 Identities = 121/170 (71%), Gaps = 5/170 (3%) Strand=Plus/Minus Query 1335 GGGAAGACCAACATCGCGGAGGCCATAGCCCACACTGTGCCCTTCTACGGGTGCGTAAAC 1394 || || |||||| ||||| |||| | |||||| || | || ||||| || ||| | | Sbjct 5428568 GGAAAAACCAACCTCGCG-AGGCTACTGCCCACGCTTTTCCGTTCTAGGGCTGCCTCAGG 5428510 Query 1395 TGGACCAATGAGAACTTTCCCTTCAACGACTGTGTCGACAAGATGGTGATCTGGTGGGAG 1454 ||| | ||| |||||| ||||| | ||| | || ||| || | | |||||||||| Sbjct 5428509 TGGCCAAAT----ACTTTCGCTTCAGTGTCTGCCTGGAGAAGCTGATCAGCTGGTGGGAG 5428454 Query 1455 GAGGGGAAGATGACCGCCAAGGTCGTGGAGTCGGCCAAAGCCATTCTCGG 1504 ||||| |||| ||| | || ||||| || ||||| ||| |||| || Sbjct 5428453 GAGGGAAAGAGGACAGTGAAAACGGTGGAATCCGCCAAGGCCTTTCTGGG 5428404 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 14860288974240