Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cavia_20porcellus_20[refseq_20GCF_5F000151735.1_202008-03-03] 3,144 sequences; 2,723,219,641 total letters Query= NC_001510.1 Length=5149 Score E Sequences producing significant alignments: (Bits) Value seq2955 159 1e-35 seq3116 116 1e-22 >seq2955 Length=1296243 Score = 159 bits (176), Expect = 1e-35 Identities = 205/280 (73%), Gaps = 2/280 (1%) Strand=Plus/Plus Query 1506 GTTGGCAATGTTGGTTGCTATAATGCAGCCAATGTAAACTTTCCATTTAATGACTGTACC 1565 ||||| |||||| | ||||| ||| ||| || | |||||||| ||||||||||| | Sbjct 79880 GTTGGTAATGTTTGGTGCTACAATCCAGGAGATATTAACTTTCC-TTTAATGACTGCTGC 79938 Query 1566 AACAAGAACTTGATTTGGGTAGAAGAAGCTGGTAACTTTGGACAGCAAGTAAACCAGTTT 1625 | || || | | | || ||||||||||||| || || || ||||||||||||| || Sbjct 79939 AGAAAAGACATAACTCGGATAGAAGAAGCTGGAAATTTAGGGAAGCAAGTAAACCAATTC 79998 Query 1626 AAAGCCATTTGCTCTGGTCAAACTATTCGCATTGATCAAAAAGGAAAAGGCAGCAAACAG 1685 || || || || || || | ||| | ||||||||||| | ||||| |||||| Sbjct 79999 AAGGCAATCATGTCAGGGCACATCATTAGACTTGATCAAAAAAGGAAAGGTAGCAAATCC 80058 Query 1686 ATTGAACCAACACCAGTCATCATGACCACAAATGAGAACATTACAGTGGTCAGAATAGGC 1745 |||||||||||| |||| ||||| || | | |||| ||||||| || || ||||| | Sbjct 80059 ATTGAACCAACATCAGTAATCATAACTAGCAGTGAGGACATTACTGTTGTTAGAATTGAA 80118 Query 1746 TGCGAAGAAAGACCAGAACACACTCAACCAATCAGAGACA 1785 || || ||||||||||||| | |||||| | | ||| Sbjct 80119 TGTAAAATTAGACCAGAACACAAT-GACCAATTAAACACA 80157 >seq3116 Length=27942054 Score = 116 bits (128), Expect = 1e-22 Identities = 186/267 (70%), Gaps = 0/267 (0%) Strand=Plus/Plus Query 1427 AGGCAAAAGAAATACTGTTTTATTTCATGGACCAGCCAGCACAGGCAAATCTATTATTGC 1486 ||| ||||||| || || | || || |||||||| || ||||| ||| | || || Sbjct 12834508 AGGTAAAAGAATCACCATTCTCTTACAGGGACCAGCAAGTACAGGTAAAAGCTTAATAGC 12834567 Query 1487 ACAAGCCATAGCACAAGCAGTTGGCAATGTTGGTTGCTATAATGCAGCCAATGTAAACTT 1546 |||| || | |||| ||||| | ||||| ||| || ||||||||||||| Sbjct 12834568 ACAAAAAATTTGTGAGTTGATTGGTAATGTAAGCTGCTACAATCCATCCAATGTAAACTT 12834627 Query 1547 TCCATTTAATGACTGTACCAACAAGAACTTGATTTGGGTAGAAGAAGCTGGTAACTTTGG 1606 ||| ||||||||||| ||| || || | || ||| |||| || | || || | || Sbjct 12834628 TCCTTTTAATGACTGCTGCAATAAAAATATAATATGGATAGAGGAGGAAGGCAATCTAGG 12834687 Query 1607 ACAGCAAGTAAACCAGTTTAAAGCCATTTGCTCTGGTCAAACTATTCGCATTGATCAAAA 1666 ||||||||||||||| ||||| || ||| || || |||| ||| | || || | Sbjct 12834688 ACAGCAAGTAAACCAATTTAAGGCAATTATGTCAGGACAAAGTATCAGACAAGACCAGAG 12834747 Query 1667 AGGAAAAGGCAGCAAACAGATTGAACC 1693 |||||| ||||| || |||||||| Sbjct 12834748 AGGAAAGGGCAGTAAGTCAATTGAACC 12834774 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 16364237255440