Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Cavia_20porcellus_20[refseq_20GCF_5F000151735.1_202008-03-03]
3,144 sequences; 2,723,219,641 total letters
Query= NC_001510.1
Length=5149
Score E
Sequences producing significant alignments: (Bits) Value
seq2955 159 1e-35
seq3116 116 1e-22
>seq2955
Length=1296243
Score = 159 bits (176), Expect = 1e-35
Identities = 205/280 (73%), Gaps = 2/280 (1%)
Strand=Plus/Plus
Query 1506 GTTGGCAATGTTGGTTGCTATAATGCAGCCAATGTAAACTTTCCATTTAATGACTGTACC 1565
||||| |||||| | ||||| ||| ||| || | |||||||| ||||||||||| |
Sbjct 79880 GTTGGTAATGTTTGGTGCTACAATCCAGGAGATATTAACTTTCC-TTTAATGACTGCTGC 79938
Query 1566 AACAAGAACTTGATTTGGGTAGAAGAAGCTGGTAACTTTGGACAGCAAGTAAACCAGTTT 1625
| || || | | | || ||||||||||||| || || || ||||||||||||| ||
Sbjct 79939 AGAAAAGACATAACTCGGATAGAAGAAGCTGGAAATTTAGGGAAGCAAGTAAACCAATTC 79998
Query 1626 AAAGCCATTTGCTCTGGTCAAACTATTCGCATTGATCAAAAAGGAAAAGGCAGCAAACAG 1685
|| || || || || || | ||| | ||||||||||| | ||||| ||||||
Sbjct 79999 AAGGCAATCATGTCAGGGCACATCATTAGACTTGATCAAAAAAGGAAAGGTAGCAAATCC 80058
Query 1686 ATTGAACCAACACCAGTCATCATGACCACAAATGAGAACATTACAGTGGTCAGAATAGGC 1745
|||||||||||| |||| ||||| || | | |||| ||||||| || || ||||| |
Sbjct 80059 ATTGAACCAACATCAGTAATCATAACTAGCAGTGAGGACATTACTGTTGTTAGAATTGAA 80118
Query 1746 TGCGAAGAAAGACCAGAACACACTCAACCAATCAGAGACA 1785
|| || ||||||||||||| | |||||| | | |||
Sbjct 80119 TGTAAAATTAGACCAGAACACAAT-GACCAATTAAACACA 80157
>seq3116
Length=27942054
Score = 116 bits (128), Expect = 1e-22
Identities = 186/267 (70%), Gaps = 0/267 (0%)
Strand=Plus/Plus
Query 1427 AGGCAAAAGAAATACTGTTTTATTTCATGGACCAGCCAGCACAGGCAAATCTATTATTGC 1486
||| ||||||| || || | || || |||||||| || ||||| ||| | || ||
Sbjct 12834508 AGGTAAAAGAATCACCATTCTCTTACAGGGACCAGCAAGTACAGGTAAAAGCTTAATAGC 12834567
Query 1487 ACAAGCCATAGCACAAGCAGTTGGCAATGTTGGTTGCTATAATGCAGCCAATGTAAACTT 1546
|||| || | |||| ||||| | ||||| ||| || |||||||||||||
Sbjct 12834568 ACAAAAAATTTGTGAGTTGATTGGTAATGTAAGCTGCTACAATCCATCCAATGTAAACTT 12834627
Query 1547 TCCATTTAATGACTGTACCAACAAGAACTTGATTTGGGTAGAAGAAGCTGGTAACTTTGG 1606
||| ||||||||||| ||| || || | || ||| |||| || | || || | ||
Sbjct 12834628 TCCTTTTAATGACTGCTGCAATAAAAATATAATATGGATAGAGGAGGAAGGCAATCTAGG 12834687
Query 1607 ACAGCAAGTAAACCAGTTTAAAGCCATTTGCTCTGGTCAAACTATTCGCATTGATCAAAA 1666
||||||||||||||| ||||| || ||| || || |||| ||| | || || |
Sbjct 12834688 ACAGCAAGTAAACCAATTTAAGGCAATTATGTCAGGACAAAGTATCAGACAAGACCAGAG 12834747
Query 1667 AGGAAAAGGCAGCAAACAGATTGAACC 1693
|||||| ||||| || ||||||||
Sbjct 12834748 AGGAAAGGGCAGTAAGTCAATTGAACC 12834774
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 16364237255440
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |