Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Cavia_20porcellus_20[refseq_20GCF_5F000151735.1_202008-03-03]
3,144 sequences; 2,723,219,641 total letters
Query= NC_001539.1
Length=5323
Score E
Sequences producing significant alignments: (Bits) Value
seq3116 145 3e-31
seq2955 141 3e-30
>seq3116
Length=27942054
Score = 145 bits (160), Expect = 3e-31
Identities = 196/268 (73%), Gaps = 4/268 (1%)
Strand=Plus/Plus
Query 1442 GGTAAAAGAAATACAGTTCTTTTTCATGGACCAGCAAGTACAGG-AAAATCTATCATTGC 1500
|||||||||| || |||| || || ||||||||||||||||| |||| || | || ||
Sbjct 12834509 GGTAAAAGAATCACCATTCTCTTACAGGGACCAGCAAGTACAGGTAAAAGCT-TAATAGC 12834567
Query 1501 TCAAGCCATAGCACAAGCTG-TGGGTAATGTTGGTTGTTATAATGCAGCAAATGTAAATT 1559
||| || | | || | |||||||| | || || ||| || | |||||||| |
Sbjct 12834568 ACAAAAAATTTGTGA-GTTGATTGGTAATGTAAGCTGCTACAATCCATCCAATGTAAACT 12834626
Query 1560 TTCCATTTAATGACTGTACCAATAAAAATTTAATTTGGATTGAAGAAGCTGGTAACTTTG 1619
|||| ||||||||||| |||||||||| |||| ||||| || || | || || | |
Sbjct 12834627 TTCCTTTTAATGACTGCTGCAATAAAAATATAATATGGATAGAGGAGGAAGGCAATCTAG 12834686
Query 1620 GTCAACAAGTTAATCAATTTAAAGCAATTTGTTCTGGACAAACAATTAGAATTGATCAAA 1679
| || ||||| || |||||||| |||||| || ||||||| || ||| || || |
Sbjct 12834687 GACAGCAAGTAAACCAATTTAAGGCAATTATGTCAGGACAAAGTATCAGACAAGACCAGA 12834746
Query 1680 AAGGTAAAGGAAGTAAGCAAATTGAACC 1707
||| || || |||||| |||||||||
Sbjct 12834747 GAGGAAAGGGCAGTAAGTCAATTGAACC 12834774
>seq2955
Length=1296243
Score = 141 bits (156), Expect = 3e-30
Identities = 201/280 (72%), Gaps = 2/280 (1%)
Strand=Plus/Plus
Query 1520 GTGGGTAATGTTGGTTGTTATAATGCAGCAAATGTAAATTTTCCATTTAATGACTGTACC 1579
|| ||||||||| | || || ||| ||| | || | || ||||| ||||||||||| |
Sbjct 79880 GTTGGTAATGTTTGGTGCTACAATCCAGGAGATATTAACTTTCC-TTTAATGACTGCTGC 79938
Query 1580 AATAAAAATTTAATTTGGATTGAAGAAGCTGGTAACTTTGGTCAACAAGTTAATCAATTT 1639
| ||| | ||| | |||| ||||||||||| || || || | ||||| || |||||
Sbjct 79939 AGAAAAGACATAACTCGGATAGAAGAAGCTGGAAATTTAGGGAAGCAAGTAAACCAATTC 79998
Query 1640 AAAGCAATTTGTTCTGGACAAACAATTAGAATTGATCAAAAAGGTAAAGGAAGTAAGCAA 1699
|| ||||| || || || | |||||| ||||||||||| | ||||| || ||
Sbjct 79999 AAGGCAATCATGTCAGGGCACATCATTAGACTTGATCAAAAAAGGAAAGGTAGCAAATCC 80058
Query 1700 ATTGAACCAACTCCAGTAATTATGACAACTAATGAAAATATAACAATTGTGAGAATTGGA 1759
||||||||||| ||||||| || || | | ||| | || || |||| ||||||| |
Sbjct 80059 ATTGAACCAACATCAGTAATCATAACTAGCAGTGAGGACATTACTGTTGTTAGAATTGAA 80118
Query 1760 TGTGAAGAAAGACCTGAACATACACAACCAATAAGAGACA 1799
||| || ||||| ||||| | | |||||| | | |||
Sbjct 80119 TGTAAAATTAGACCAGAACACA-ATGACCAATTAAACACA 80157
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 16921018108480
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |