Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cavia_20porcellus_20[refseq_20GCF_5F000151735.1_202008-03-03] 3,144 sequences; 2,723,219,641 total letters Query= NC_001539.1 Length=5323 Score E Sequences producing significant alignments: (Bits) Value seq3116 145 3e-31 seq2955 141 3e-30 >seq3116 Length=27942054 Score = 145 bits (160), Expect = 3e-31 Identities = 196/268 (73%), Gaps = 4/268 (1%) Strand=Plus/Plus Query 1442 GGTAAAAGAAATACAGTTCTTTTTCATGGACCAGCAAGTACAGG-AAAATCTATCATTGC 1500 |||||||||| || |||| || || ||||||||||||||||| |||| || | || || Sbjct 12834509 GGTAAAAGAATCACCATTCTCTTACAGGGACCAGCAAGTACAGGTAAAAGCT-TAATAGC 12834567 Query 1501 TCAAGCCATAGCACAAGCTG-TGGGTAATGTTGGTTGTTATAATGCAGCAAATGTAAATT 1559 ||| || | | || | |||||||| | || || ||| || | |||||||| | Sbjct 12834568 ACAAAAAATTTGTGA-GTTGATTGGTAATGTAAGCTGCTACAATCCATCCAATGTAAACT 12834626 Query 1560 TTCCATTTAATGACTGTACCAATAAAAATTTAATTTGGATTGAAGAAGCTGGTAACTTTG 1619 |||| ||||||||||| |||||||||| |||| ||||| || || | || || | | Sbjct 12834627 TTCCTTTTAATGACTGCTGCAATAAAAATATAATATGGATAGAGGAGGAAGGCAATCTAG 12834686 Query 1620 GTCAACAAGTTAATCAATTTAAAGCAATTTGTTCTGGACAAACAATTAGAATTGATCAAA 1679 | || ||||| || |||||||| |||||| || ||||||| || ||| || || | Sbjct 12834687 GACAGCAAGTAAACCAATTTAAGGCAATTATGTCAGGACAAAGTATCAGACAAGACCAGA 12834746 Query 1680 AAGGTAAAGGAAGTAAGCAAATTGAACC 1707 ||| || || |||||| ||||||||| Sbjct 12834747 GAGGAAAGGGCAGTAAGTCAATTGAACC 12834774 >seq2955 Length=1296243 Score = 141 bits (156), Expect = 3e-30 Identities = 201/280 (72%), Gaps = 2/280 (1%) Strand=Plus/Plus Query 1520 GTGGGTAATGTTGGTTGTTATAATGCAGCAAATGTAAATTTTCCATTTAATGACTGTACC 1579 || ||||||||| | || || ||| ||| | || | || ||||| ||||||||||| | Sbjct 79880 GTTGGTAATGTTTGGTGCTACAATCCAGGAGATATTAACTTTCC-TTTAATGACTGCTGC 79938 Query 1580 AATAAAAATTTAATTTGGATTGAAGAAGCTGGTAACTTTGGTCAACAAGTTAATCAATTT 1639 | ||| | ||| | |||| ||||||||||| || || || | ||||| || ||||| Sbjct 79939 AGAAAAGACATAACTCGGATAGAAGAAGCTGGAAATTTAGGGAAGCAAGTAAACCAATTC 79998 Query 1640 AAAGCAATTTGTTCTGGACAAACAATTAGAATTGATCAAAAAGGTAAAGGAAGTAAGCAA 1699 || ||||| || || || | |||||| ||||||||||| | ||||| || || Sbjct 79999 AAGGCAATCATGTCAGGGCACATCATTAGACTTGATCAAAAAAGGAAAGGTAGCAAATCC 80058 Query 1700 ATTGAACCAACTCCAGTAATTATGACAACTAATGAAAATATAACAATTGTGAGAATTGGA 1759 ||||||||||| ||||||| || || | | ||| | || || |||| ||||||| | Sbjct 80059 ATTGAACCAACATCAGTAATCATAACTAGCAGTGAGGACATTACTGTTGTTAGAATTGAA 80118 Query 1760 TGTGAAGAAAGACCTGAACATACACAACCAATAAGAGACA 1799 ||| || ||||| ||||| | | |||||| | | ||| Sbjct 80119 TGTAAAATTAGACCAGAACACA-ATGACCAATTAAACACA 80157 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 16921018108480