Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cavia_20porcellus_20[refseq_20GCF_5F000151735.1_202008-03-03] 3,144 sequences; 2,723,219,641 total letters Query= NC_001701.1 Length=5106 Score E Sequences producing significant alignments: (Bits) Value seq3108 163 9e-37 >seq3108 Length=23989115 Score = 163 bits (180), Expect = 9e-37 Identities = 297/431 (69%), Gaps = 3/431 (1%) Strand=Plus/Plus Query 1522 GAAACGCCATATGGCTCTACGGACCTGCCACCACCGGGAAGACCAACATTGCAGAAGCTA 1581 ||||| || | ||| | | ||||| | ||||| || ||||||||||| | || || | Sbjct 10624709 GAAACACCTTGTGGGTGTTTGGACCGGTGACCACAGGCAAGACCAACATCGTGGAGGC-A 10624767 Query 1582 TTGCCCATGCTGTACCCTTCTATGGCTGTGTTAACTGGACTAATGAGAACTTTCCTTTTA 1641 | || |||||||||| ||| || || ||||| ||||||||||||||||||||||| || | Sbjct 10624768 TCGCTCATGCTGTACGCTTTTACGGGTGTGTAAACTGGACTAATGAGAACTTTCCCTTCA 10624827 Query 1642 ATGATTGTGTTGATAAAATGCTGATTTGGTGGGAGGAGGGAAAAATGACTAATAAGGTTG 1701 | | || || || || ||||| ||||||||| |||| || || ||||| ||||| | Sbjct 10624828 ACAACTGCGTCGACAAGATGCTCATTTGGTGGAAGGAAGGCAAGATGACGGCCAAGGTAG 10624887 Query 1702 TTGAATCTGCAAAAGCAATTTTGGGAGGGTCTGCTGTCCGGGTAGACCAGAAATGTAAAG 1761 | |||||||| || || || ||||| || | | ||||| || || ||||||||| Sbjct 10624888 TGGAATCTGCTAAGGCCATCTTGGGGGGTGCCAAAGGACGGGTGGATCACAAATGTAAAT 10624947 Query 1762 GATCTGTTTGTATTGAACCTACTCCTGTAATTATTACTAGTAATACTGATATGTGTATGA 1821 || || || || | || || || || ||||| | || | ||| | | Sbjct 10624948 CCTCCGTACAAATAGATGCCACCCCGGTCATCATTACCTCCAGTAGCAACATGGGCTGCA 10625007 Query 1822 TTGTTGATGGCAACTCTACTACAATGGAACA-TAGAATACCATTAGAGGAGCGTATGTTT 1880 | | || || ||||| || | | ||||| || | || ||| |||| || |||||| Sbjct 10625008 TCATCGAGGGAAACTCGACGAACTTTGAACACGAGCA-GCCGTTACAGGATCGGATGTTT 10625066 Query 1881 CAAATTGTCCTATCACATAAATTGGAGCCTTCTTTTGGAAAAATTTCTAAAAAAGAAGTC 1940 || ||| || | || | | | | | |||||||||||| | ||| | |||||| Sbjct 10625067 AAATTTGAACTGACTCAAAGACTCATACGTGACTTTGGAAAAATTACCAAACAGGAAGTC 10625126 Query 1941 AGAGAATTTTT 1951 | ||| ||||| Sbjct 10625127 AAAGACTTTTT 10625137 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 16226641987160