Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Cavia_20porcellus_20[refseq_20GCF_5F000151735.1_202008-03-03]
3,144 sequences; 2,723,219,641 total letters
Query= NC_001701.1
Length=5106
Score E
Sequences producing significant alignments: (Bits) Value
seq3108 163 9e-37
>seq3108
Length=23989115
Score = 163 bits (180), Expect = 9e-37
Identities = 297/431 (69%), Gaps = 3/431 (1%)
Strand=Plus/Plus
Query 1522 GAAACGCCATATGGCTCTACGGACCTGCCACCACCGGGAAGACCAACATTGCAGAAGCTA 1581
||||| || | ||| | | ||||| | ||||| || ||||||||||| | || || |
Sbjct 10624709 GAAACACCTTGTGGGTGTTTGGACCGGTGACCACAGGCAAGACCAACATCGTGGAGGC-A 10624767
Query 1582 TTGCCCATGCTGTACCCTTCTATGGCTGTGTTAACTGGACTAATGAGAACTTTCCTTTTA 1641
| || |||||||||| ||| || || ||||| ||||||||||||||||||||||| || |
Sbjct 10624768 TCGCTCATGCTGTACGCTTTTACGGGTGTGTAAACTGGACTAATGAGAACTTTCCCTTCA 10624827
Query 1642 ATGATTGTGTTGATAAAATGCTGATTTGGTGGGAGGAGGGAAAAATGACTAATAAGGTTG 1701
| | || || || || ||||| ||||||||| |||| || || ||||| ||||| |
Sbjct 10624828 ACAACTGCGTCGACAAGATGCTCATTTGGTGGAAGGAAGGCAAGATGACGGCCAAGGTAG 10624887
Query 1702 TTGAATCTGCAAAAGCAATTTTGGGAGGGTCTGCTGTCCGGGTAGACCAGAAATGTAAAG 1761
| |||||||| || || || ||||| || | | ||||| || || |||||||||
Sbjct 10624888 TGGAATCTGCTAAGGCCATCTTGGGGGGTGCCAAAGGACGGGTGGATCACAAATGTAAAT 10624947
Query 1762 GATCTGTTTGTATTGAACCTACTCCTGTAATTATTACTAGTAATACTGATATGTGTATGA 1821
|| || || || | || || || || ||||| | || | ||| | |
Sbjct 10624948 CCTCCGTACAAATAGATGCCACCCCGGTCATCATTACCTCCAGTAGCAACATGGGCTGCA 10625007
Query 1822 TTGTTGATGGCAACTCTACTACAATGGAACA-TAGAATACCATTAGAGGAGCGTATGTTT 1880
| | || || ||||| || | | ||||| || | || ||| |||| || ||||||
Sbjct 10625008 TCATCGAGGGAAACTCGACGAACTTTGAACACGAGCA-GCCGTTACAGGATCGGATGTTT 10625066
Query 1881 CAAATTGTCCTATCACATAAATTGGAGCCTTCTTTTGGAAAAATTTCTAAAAAAGAAGTC 1940
|| ||| || | || | | | | | |||||||||||| | ||| | ||||||
Sbjct 10625067 AAATTTGAACTGACTCAAAGACTCATACGTGACTTTGGAAAAATTACCAAACAGGAAGTC 10625126
Query 1941 AGAGAATTTTT 1951
| ||| |||||
Sbjct 10625127 AAAGACTTTTT 10625137
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 16226641987160
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |