Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cavia_20porcellus_20[refseq_20GCF_5F000151735.1_202008-03-03] 3,144 sequences; 2,723,219,641 total letters Query= NC_001718.1 Length=5075 Score E Sequences producing significant alignments: (Bits) Value seq2955 188 2e-44 seq3116 154 5e-34 >seq2955 Length=1296243 Score = 188 bits (208), Expect = 2e-44 Identities = 290/403 (72%), Gaps = 8/403 (2%) Strand=Plus/Plus Query 1414 AAAGTCTGCCATGCTATAACTTG-TGTACTAAACAGACAAGGAGGAAAAAGAAATACAAT 1472 |||||| ||||| || || || ||| ||||||| ||| ||| ||| |||| ||| | Sbjct 79760 AAAGTCATTCATGCAATCACATGCTGT-CTAAACAAGCAACTAGGCAAATGAAACACAGT 79818 Query 1473 TCTATTTCATGGGCCAGCATCAACAGGAAAAAGTATAATTGCTCAACACATTGCAAACTT 1532 | || | || | || | |||||||| || |||| | || | ||| | || Sbjct 79819 TTTACTGCAAGAACCTGTTAACACAGGAAAGAGCGTAATCACACAGAAAATTTTGAGGTT 79878 Query 1533 AGTTGGTAATGTTGGTTGCTACAATGCAGCCAATGTGAACTTTCCATTTAATGACTG-TA 1591 |||||||||||| | ||||||||| ||| || | |||||||| ||||||||||| | Sbjct 79879 GGTTGGTAATGTTTGGTGCTACAATCCAGGAGATATTAACTTTCC-TTTAATGACTGCTG 79937 Query 1592 CAAATAAAAACTTAATATGGATTGAAGAAGCAGGAAACTTCTCTAACCAAGTAAACCAAT 1651 || | ||| || ||| |||| |||||||| ||||| || || ||||||||||||| Sbjct 79938 CAGA-AAAGACATAACTCGGATAGAAGAAGCTGGAAATTTAGGGAAGCAAGTAAACCAAT 79996 Query 1652 TCAAAGCCAT-ATGTTCAGGTCAAACAATTAGAATTGACCAAAAAGGTAAAGGAAGCAAA 1710 |||| || || ||| ||||| || | |||||| |||| |||||| | ||||| |||||| Sbjct 79997 TCAAGGCAATCATG-TCAGGGCACATCATTAGACTTGATCAAAAAAGGAAAGGTAGCAAA 80055 Query 1711 CAAATTGAACCAACTCCTGTAATAATGACTACAAATGAAGACATAACTAAAGTTAGAATA 1770 ||||||||||| | ||||| || |||| | ||| ||||| ||| |||||||| Sbjct 80056 TCCATTGAACCAACATCAGTAATCATAACTAGCAGTGAGGACATTACTGTTGTTAGAATT 80115 Query 1771 GGATGCGAGGAAAGACCAGAACATACACAACCAATAAGAGACA 1813 | ||| | ||||||||||| | | |||||| | | ||| Sbjct 80116 GAATGTAAAATTAGACCAGAACACA-ATGACCAATTAAACACA 80157 >seq3116 Length=27942054 Score = 154 bits (170), Expect = 5e-34 Identities = 199/270 (74%), Gaps = 6/270 (2%) Strand=Plus/Plus Query 1455 AGGAAAAAGAAATACAATTCTATTTCATGGGCCAGCATCAACAGGAAAAAGTATAATTGC 1514 ||| ||||||| || ||||| || || || |||||| ||||| ||||| |||| || Sbjct 12834508 AGGTAAAAGAATCACCATTCTCTTACAGGGACCAGCAAGTACAGGTAAAAGCTTAATAGC 12834567 Query 1515 TCAACACATTGCAAACTTAGTTGGTAATGTTGGTTGCTACAATGCAGCCAATGTGAACTT 1574 ||| | ||| | || |||||||||| | ||||||||| || ||||||| ||||| Sbjct 12834568 ACAAAAAATTTGTGAGTTGATTGGTAATGTAAGCTGCTACAATCCATCCAATGTAAACTT 12834627 Query 1575 TCCATTTAATGACTGTACAAATAAAAACTTAATATGGATTGAAGAAGCAGGAAACTTCTC 1634 ||| ||||||||||| |||||||| |||||||||| || || | ||| || ||| Sbjct 12834628 TCCTTTTAATGACTGCTGCAATAAAAATATAATATGGATAGAGGAGGAAGGCAA--TCTA 12834685 Query 1635 TAAC--CAAGTAAACCAATTCAAAGCCA-TATGTTCAGGTCAAACAATTAGAATTGACCA 1691 || |||||||||||||| || || | |||| ||||| |||| || ||| ||||| Sbjct 12834686 GGACAGCAAGTAAACCAATTTAAGGCAATTATG-TCAGGACAAAGTATCAGACAAGACCA 12834744 Query 1692 AAAAGGTAAAGGAAGCAAACAAATTGAACC 1721 | ||| || || || || ||||||||| Sbjct 12834745 GAGAGGAAAGGGCAGTAAGTCAATTGAACC 12834774 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 16127445398400