Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Cavia_20porcellus_20[refseq_20GCF_5F000151735.1_202008-03-03]
3,144 sequences; 2,723,219,641 total letters
Query= NC_001718.1
Length=5075
Score E
Sequences producing significant alignments: (Bits) Value
seq2955 188 2e-44
seq3116 154 5e-34
>seq2955
Length=1296243
Score = 188 bits (208), Expect = 2e-44
Identities = 290/403 (72%), Gaps = 8/403 (2%)
Strand=Plus/Plus
Query 1414 AAAGTCTGCCATGCTATAACTTG-TGTACTAAACAGACAAGGAGGAAAAAGAAATACAAT 1472
|||||| ||||| || || || ||| ||||||| ||| ||| ||| |||| ||| |
Sbjct 79760 AAAGTCATTCATGCAATCACATGCTGT-CTAAACAAGCAACTAGGCAAATGAAACACAGT 79818
Query 1473 TCTATTTCATGGGCCAGCATCAACAGGAAAAAGTATAATTGCTCAACACATTGCAAACTT 1532
| || | || | || | |||||||| || |||| | || | ||| | ||
Sbjct 79819 TTTACTGCAAGAACCTGTTAACACAGGAAAGAGCGTAATCACACAGAAAATTTTGAGGTT 79878
Query 1533 AGTTGGTAATGTTGGTTGCTACAATGCAGCCAATGTGAACTTTCCATTTAATGACTG-TA 1591
|||||||||||| | ||||||||| ||| || | |||||||| ||||||||||| |
Sbjct 79879 GGTTGGTAATGTTTGGTGCTACAATCCAGGAGATATTAACTTTCC-TTTAATGACTGCTG 79937
Query 1592 CAAATAAAAACTTAATATGGATTGAAGAAGCAGGAAACTTCTCTAACCAAGTAAACCAAT 1651
|| | ||| || ||| |||| |||||||| ||||| || || |||||||||||||
Sbjct 79938 CAGA-AAAGACATAACTCGGATAGAAGAAGCTGGAAATTTAGGGAAGCAAGTAAACCAAT 79996
Query 1652 TCAAAGCCAT-ATGTTCAGGTCAAACAATTAGAATTGACCAAAAAGGTAAAGGAAGCAAA 1710
|||| || || ||| ||||| || | |||||| |||| |||||| | ||||| ||||||
Sbjct 79997 TCAAGGCAATCATG-TCAGGGCACATCATTAGACTTGATCAAAAAAGGAAAGGTAGCAAA 80055
Query 1711 CAAATTGAACCAACTCCTGTAATAATGACTACAAATGAAGACATAACTAAAGTTAGAATA 1770
||||||||||| | ||||| || |||| | ||| ||||| ||| ||||||||
Sbjct 80056 TCCATTGAACCAACATCAGTAATCATAACTAGCAGTGAGGACATTACTGTTGTTAGAATT 80115
Query 1771 GGATGCGAGGAAAGACCAGAACATACACAACCAATAAGAGACA 1813
| ||| | ||||||||||| | | |||||| | | |||
Sbjct 80116 GAATGTAAAATTAGACCAGAACACA-ATGACCAATTAAACACA 80157
>seq3116
Length=27942054
Score = 154 bits (170), Expect = 5e-34
Identities = 199/270 (74%), Gaps = 6/270 (2%)
Strand=Plus/Plus
Query 1455 AGGAAAAAGAAATACAATTCTATTTCATGGGCCAGCATCAACAGGAAAAAGTATAATTGC 1514
||| ||||||| || ||||| || || || |||||| ||||| ||||| |||| ||
Sbjct 12834508 AGGTAAAAGAATCACCATTCTCTTACAGGGACCAGCAAGTACAGGTAAAAGCTTAATAGC 12834567
Query 1515 TCAACACATTGCAAACTTAGTTGGTAATGTTGGTTGCTACAATGCAGCCAATGTGAACTT 1574
||| | ||| | || |||||||||| | ||||||||| || ||||||| |||||
Sbjct 12834568 ACAAAAAATTTGTGAGTTGATTGGTAATGTAAGCTGCTACAATCCATCCAATGTAAACTT 12834627
Query 1575 TCCATTTAATGACTGTACAAATAAAAACTTAATATGGATTGAAGAAGCAGGAAACTTCTC 1634
||| ||||||||||| |||||||| |||||||||| || || | ||| || |||
Sbjct 12834628 TCCTTTTAATGACTGCTGCAATAAAAATATAATATGGATAGAGGAGGAAGGCAA--TCTA 12834685
Query 1635 TAAC--CAAGTAAACCAATTCAAAGCCA-TATGTTCAGGTCAAACAATTAGAATTGACCA 1691
|| |||||||||||||| || || | |||| ||||| |||| || ||| |||||
Sbjct 12834686 GGACAGCAAGTAAACCAATTTAAGGCAATTATG-TCAGGACAAAGTATCAGACAAGACCA 12834744
Query 1692 AAAAGGTAAAGGAAGCAAACAAATTGAACC 1721
| ||| || || || || |||||||||
Sbjct 12834745 GAGAGGAAAGGGCAGTAAGTCAATTGAACC 12834774
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 16127445398400
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |