Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cavia_20porcellus_20[refseq_20GCF_5F000151735.1_202008-03-03] 3,144 sequences; 2,723,219,641 total letters Query= NC_001729.1 Length=4726 Score E Sequences producing significant alignments: (Bits) Value seq3108 363 5e-97 seq3047 93.3 1e-15 >seq3108 Length=23989115 Score = 363 bits (402), Expect = 5e-97 Identities = 531/744 (71%), Gaps = 10/744 (1%) Strand=Plus/Plus Query 987 TACATGGAGCTGGTCGGGTGGCTGGTGGACCGCGGGATCACGTCAGAAAAGCAATGGATT 1046 ||||||| ||| || ||||||||||| | | |||||||| || |||||||||| Sbjct 10624400 TACATGGCTCTGATCATCTGGCTGGTGGAGAACCGTATCACGTCTGAGCAGCAATGGATC 10624459 Query 1047 CAGGAGGACCAGGCCTCGTACATCTCCTTCAACGC-CGCCTCCAACTCGCGGTCCCAGAT 1105 |||||| | || | || | || | | | || | ||| | | || ||||| Sbjct 10624460 CAGGAGAATCAAGAGAGTTATCTGTCGTATAGTGGACGGGT--AACGCTTGTTCTCAGAT 10624517 Query 1106 CAAGGCCGCGCTGGACAATGCCTCCAAGATCATGAGCCTGACAAAGACGGCTCCGGACTA 1165 ||||| || || ||||||||| |||||| |||| |||||| ||||| || ||||||| Sbjct 10624518 CAAGGTGGCTTTGAACAATGCCTGCAAGATTATGAACCTGACCAAGACAGCAGCGGACTA 10624577 Query 1166 CCTGGTGGGCAGCAACCCGCCGGAGGACATTACCAAAAATCGGATCTACCAAATCCTGG- 1224 ||||||||| | | || ||||| |||| |||| || | |||| Sbjct 10624578 TTTGGTGGGCAAGGAGTCCCCTACCAACATTGAGGAAAACAGGATTTATCG---CCTGTT 10624634 Query 1225 -AG-CTGAACGGGTACGATCCGCAGTACGCGGCCTCCGTCTTCCTGGGCTGGGCGCAAAA 1282 || ||||| || || |||||| || | || ||| | | ||||||||| ||||| Sbjct 10624635 TAGACTGAATGGATATGATCCGGCCTATGGGGGATCCATACTGCTGGGCTGGTGTCAAAA 10624694 Query 1283 GAAGTTCGGGAAGAGGAACACCATCTGGCTCTTTGGGCCGGCCACGACGGGTAAAACCAA 1342 | | | || ||| | |||||| | ||| | ||||| |||| || || || || ||||| Sbjct 10624695 GGACTCTGGCAAGCGAAACACCTTGTGGGTGTTTGGACCGGTGACCACAGGCAAGACCAA 10624754 Query 1343 CATCGCGGAAGCCATCGCCCACGCCGTGCCCTTCTACGGCTGCGTAAACTGGACCAATGA 1402 ||||| ||| || ||||| || || || | ||| ||||| || ||||||||||| ||||| Sbjct 10624755 CATCGTGGAGGC-ATCGCTCATGCTGTACGCTTTTACGGGTGTGTAAACTGGACTAATGA 10624813 Query 1403 GAACTTTCCCTTCAACGATTGCGTCGACAAGATGGTGATCTGGTGGGAGGAGGGCAAGAT 1462 |||||||||||||||| | ||||||||||||||| | || |||||| |||| |||||||| Sbjct 10624814 GAACTTTCCCTTCAACAACTGCGTCGACAAGATGCTCATTTGGTGGAAGGAAGGCAAGAT 10624873 Query 1463 GACGGCCAAGGTCGTGGAGAGCGCCAAGGCCATTCTGGGCGGAAGCAAGGTGCGCGTGGA 1522 |||||||||||| ||||| || |||||||| |||| || ||| | || ||||| Sbjct 10624874 GACGGCCAAGGTAGTGGAATCTGCTAAGGCCATCTTGGGGGGTGCCAAAGGACGGGTGGA 10624933 Query 1523 CCAAAAGTGCAAGTCATCGGCCCAGATCGAACCCACTCCCGTGATCGTCACCTCCAACAC 1582 || || || || || || | || || || |||| || || ||| | ||||||| | Sbjct 10624934 TCACAAATGTAAATCCTCCGTACAAATAGATGCCACCCCGGTCATCATTACCTCCAGTAG 10624993 Query 1583 CAACATGTGCGCCGTGATTGACGGGAACAGCACCACCTTCGAGCATCAGCAGCCGCTGCA 1642 ||||||| || | | || || || ||| || | ||| || || |||||||| | || Sbjct 10624994 CAACATGGGCTGCATCATCGAGGGAAACTCGACGAACTTTGAACACGAGCAGCCGTTACA 10625053 Query 1643 GGACCGGATGTTTGAATTTGAACTTACCCGCCGTTTGGACCATGACTTTGGGAAGGTCAC 1702 ||| ||||||||| |||||||||| || | | | | ||||||||| || | || Sbjct 10625054 GGATCGGATGTTTAAATTTGAACTGACTCAAAGACTCATACGTGACTTTGGAAAAATTAC 10625113 Query 1703 CAAACAGGAAGTAAAGGACTTTTT 1726 |||||||||||| || |||||||| Sbjct 10625114 CAAACAGGAAGTCAAAGACTTTTT 10625137 >seq3047 Length=5774023 Score = 93.3 bits (102), Expect = 1e-15 Identities = 124/171 (73%), Gaps = 5/171 (3%) Strand=Plus/Minus Query 1331 GGGTAAAACCAACATCGCGGAAGCCATCGCCCACGCCGTGCCCTTCTACGGCTGCGTAAA 1390 ||| ||||||||| ||||| | || | |||||||| | || ||||| |||||| | | Sbjct 5428569 GGGAAAAACCAACCTCGCG-AGGCTACTGCCCACGCTTTTCCGTTCTAGGGCTGCCTCAG 5428511 Query 1391 CTGGACCAATGAGAACTTTCCCTTCAACGATTGCGTCGACAAGATGGTGATCTGGTGGGA 1450 ||| | ||| |||||| ||||| | ||| | || ||| || | | ||||||||| Sbjct 5428510 GTGGCCAAAT----ACTTTCGCTTCAGTGTCTGCCTGGAGAAGCTGATCAGCTGGTGGGA 5428455 Query 1451 GGAGGGCAAGATGACGGCCAAGGTCGTGGAGAGCGCCAAGGCCATTCTGGG 1501 |||||| |||| ||| | || ||||| |||||||||| ||||||| Sbjct 5428454 GGAGGGAAAGAGGACAGTGAAAACGGTGGAATCCGCCAAGGCCTTTCTGGG 5428404 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 15010683802360