Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Cavia_20porcellus_20[refseq_20GCF_5F000151735.1_202008-03-03]
3,144 sequences; 2,723,219,641 total letters
Query= NC_001829.1
Length=4767
Score E
Sequences producing significant alignments: (Bits) Value
seq3108 352 9e-94
seq3047 78.8 3e-11
>seq3108
Length=23989115
Score = 352 bits (390), Expect = 9e-94
Identities = 527/742 (71%), Gaps = 6/742 (1%)
Strand=Plus/Plus
Query 1041 TACATGGAGCTGGTCGGGTGGCTGGTGGACCGCGGGATCACGTCAGAAAAGCAATGGATC 1100
||||||| ||| || ||||||||||| | | |||||||| || |||||||||||
Sbjct 10624400 TACATGGCTCTGATCATCTGGCTGGTGGAGAACCGTATCACGTCTGAGCAGCAATGGATC 10624459
Query 1101 CAGGAGGACCAGGCGTCCTACATCTCCTTCAACGC-CGCCTCCAACTCGCGGTCACAAAT 1159
|||||| | || | | || | || | | | || | ||| | | || || ||
Sbjct 10624460 CAGGAGAATCAAGAGAGTTATCTGTCGTATAGTGGACGGGT--AACGCTTGTTCTCAGAT 10624517
Query 1160 CAAGGCCGCGCTGGACAATGCCTCCAAAATCATGAGCCTGACAAAGACGGCTCCGGACTA 1219
||||| || || ||||||||| ||| || |||| |||||| ||||| || |||||||
Sbjct 10624518 CAAGGTGGCTTTGAACAATGCCTGCAAGATTATGAACCTGACCAAGACAGCAGCGGACTA 10624577
Query 1220 CCTGGTGGGCCAGAACCCGCCGGAGGACATTTCCAGCAACCGCATCTACCGAATCCTCGA 1279
|||||||| || | | || ||||| ||| | || || || | | |
Sbjct 10624578 TTTGGTGGGCAAGGAGTCCCCTACCAACATTGAGGAAAACAGGATTTATCGCCTGTTT-A 10624636
Query 1280 GA-TGAACGGGTACGATCCGCAGTACGCGGCCTCCGTCTTCCTGGGCTGGGCGCAAAAGA 1338
|| |||| || || |||||| || | || ||| | | ||||||||| ||||||
Sbjct 10624637 GACTGAATGGATATGATCCGGCCTATGGGGGATCCATACTGCTGGGCTGGTGTCAAAAGG 10624696
Query 1339 AGTTCGGGAAGAGGAACACCATCTGGCTCTTTGGGCCGGCCACGACGGGTAAAACCAACA 1398
| | || ||| | |||||| | ||| | ||||| |||| || || || || |||||||
Sbjct 10624697 ACTCTGGCAAGCGAAACACCTTGTGGGTGTTTGGACCGGTGACCACAGGCAAGACCAACA 10624756
Query 1399 TCGCGGAAGCCATCGCCCACGCCGTGCCCTTCTACGGCTGCGTGAACTGGACCAATGAGA 1458
||| ||| || ||||| || || || | ||| ||||| || || |||||||| |||||||
Sbjct 10624757 TCGTGGAGGC-ATCGCTCATGCTGTACGCTTTTACGGGTGTGTAAACTGGACTAATGAGA 10624815
Query 1459 ACTTTCCGTTCAACGATTGCGTCGACAAGATGGTGATCTGGTGGGAGGAGGGCAAGATGA 1518
||||||| |||||| | ||||||||||||||| | || |||||| |||| ||||||||||
Sbjct 10624816 ACTTTCCCTTCAACAACTGCGTCGACAAGATGCTCATTTGGTGGAAGGAAGGCAAGATGA 10624875
Query 1519 CGGCCAAGGTCGTAGAGAGCGCCAAGGCCATCCTGGGCGGAAGCAAGGTGCGCGTGGACC 1578
|||||||||| || || || ||||||||| |||| || ||| | || ||||| |
Sbjct 10624876 CGGCCAAGGTAGTGGAATCTGCTAAGGCCATCTTGGGGGGTGCCAAAGGACGGGTGGATC 10624935
Query 1579 AAAAGTGCAAGTCATCGGCCCAGATCGACCCAACTCCCGTGATCGTCACCTCCAACACCA 1638
| || || || || || | || || || | || || || ||| | ||||||| | ||
Sbjct 10624936 ACAAATGTAAATCCTCCGTACAAATAGATGCCACCCCGGTCATCATTACCTCCAGTAGCA 10624995
Query 1639 ACATGTGCGCGGTCATCGACGGAAACTCGACCACCTTCGAGCACCAACAACCACTCCAGG 1698
||||| || ||||||| ||||||||||| | ||| || ||| | || || | ||||
Sbjct 10624996 ACATGGGCTGCATCATCGAGGGAAACTCGACGAACTTTGAACACGAGCAGCCGTTACAGG 10625055
Query 1699 ACCGGATGTTCAAGTTCGAGCTCACCAAGCGCCTGGAGCACGACTTTGGCAAGGTCACCA 1758
| |||||||| || || || || || | | || | |||||||| || | ||||
Sbjct 10625056 ATCGGATGTTTAAATTTGAACTGACTCAAAGACTCATACGTGACTTTGGAAAAATTACCA 10625115
Query 1759 AGCAGGAAGTCAAAGACTTTTT 1780
| ||||||||||||||||||||
Sbjct 10625116 AACAGGAAGTCAAAGACTTTTT 10625137
>seq3047
Length=5774023
Score = 78.8 bits (86), Expect = 3e-11
Identities = 121/171 (71%), Gaps = 5/171 (3%)
Strand=Plus/Minus
Query 1385 GGGTAAAACCAACATCGCGGAAGCCATCGCCCACGCCGTGCCCTTCTACGGCTGCGTGAA 1444
||| ||||||||| ||||| | || | |||||||| | || ||||| |||||| | |
Sbjct 5428569 GGGAAAAACCAACCTCGCG-AGGCTACTGCCCACGCTTTTCCGTTCTAGGGCTGCCTCAG 5428511
Query 1445 CTGGACCAATGAGAACTTTCCGTTCAACGATTGCGTCGACAAGATGGTGATCTGGTGGGA 1504
||| | ||| |||||| |||| | ||| | || ||| || | | |||||||||
Sbjct 5428510 GTGGCCAAAT----ACTTTCGCTTCAGTGTCTGCCTGGAGAAGCTGATCAGCTGGTGGGA 5428455
Query 1505 GGAGGGCAAGATGACGGCCAAGGTCGTAGAGAGCGCCAAGGCCATCCTGGG 1555
|||||| |||| ||| | || || || |||||||||| | |||||
Sbjct 5428454 GGAGGGAAAGAGGACAGTGAAAACGGTGGAATCCGCCAAGGCCTTTCTGGG 5428404
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 15141879290720
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |