Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cavia_20porcellus_20[refseq_20GCF_5F000151735.1_202008-03-03] 3,144 sequences; 2,723,219,641 total letters Query= NC_001829.1 Length=4767 Score E Sequences producing significant alignments: (Bits) Value seq3108 352 9e-94 seq3047 78.8 3e-11 >seq3108 Length=23989115 Score = 352 bits (390), Expect = 9e-94 Identities = 527/742 (71%), Gaps = 6/742 (1%) Strand=Plus/Plus Query 1041 TACATGGAGCTGGTCGGGTGGCTGGTGGACCGCGGGATCACGTCAGAAAAGCAATGGATC 1100 ||||||| ||| || ||||||||||| | | |||||||| || ||||||||||| Sbjct 10624400 TACATGGCTCTGATCATCTGGCTGGTGGAGAACCGTATCACGTCTGAGCAGCAATGGATC 10624459 Query 1101 CAGGAGGACCAGGCGTCCTACATCTCCTTCAACGC-CGCCTCCAACTCGCGGTCACAAAT 1159 |||||| | || | | || | || | | | || | ||| | | || || || Sbjct 10624460 CAGGAGAATCAAGAGAGTTATCTGTCGTATAGTGGACGGGT--AACGCTTGTTCTCAGAT 10624517 Query 1160 CAAGGCCGCGCTGGACAATGCCTCCAAAATCATGAGCCTGACAAAGACGGCTCCGGACTA 1219 ||||| || || ||||||||| ||| || |||| |||||| ||||| || ||||||| Sbjct 10624518 CAAGGTGGCTTTGAACAATGCCTGCAAGATTATGAACCTGACCAAGACAGCAGCGGACTA 10624577 Query 1220 CCTGGTGGGCCAGAACCCGCCGGAGGACATTTCCAGCAACCGCATCTACCGAATCCTCGA 1279 |||||||| || | | || ||||| ||| | || || || | | | Sbjct 10624578 TTTGGTGGGCAAGGAGTCCCCTACCAACATTGAGGAAAACAGGATTTATCGCCTGTTT-A 10624636 Query 1280 GA-TGAACGGGTACGATCCGCAGTACGCGGCCTCCGTCTTCCTGGGCTGGGCGCAAAAGA 1338 || |||| || || |||||| || | || ||| | | ||||||||| |||||| Sbjct 10624637 GACTGAATGGATATGATCCGGCCTATGGGGGATCCATACTGCTGGGCTGGTGTCAAAAGG 10624696 Query 1339 AGTTCGGGAAGAGGAACACCATCTGGCTCTTTGGGCCGGCCACGACGGGTAAAACCAACA 1398 | | || ||| | |||||| | ||| | ||||| |||| || || || || ||||||| Sbjct 10624697 ACTCTGGCAAGCGAAACACCTTGTGGGTGTTTGGACCGGTGACCACAGGCAAGACCAACA 10624756 Query 1399 TCGCGGAAGCCATCGCCCACGCCGTGCCCTTCTACGGCTGCGTGAACTGGACCAATGAGA 1458 ||| ||| || ||||| || || || | ||| ||||| || || |||||||| ||||||| Sbjct 10624757 TCGTGGAGGC-ATCGCTCATGCTGTACGCTTTTACGGGTGTGTAAACTGGACTAATGAGA 10624815 Query 1459 ACTTTCCGTTCAACGATTGCGTCGACAAGATGGTGATCTGGTGGGAGGAGGGCAAGATGA 1518 ||||||| |||||| | ||||||||||||||| | || |||||| |||| |||||||||| Sbjct 10624816 ACTTTCCCTTCAACAACTGCGTCGACAAGATGCTCATTTGGTGGAAGGAAGGCAAGATGA 10624875 Query 1519 CGGCCAAGGTCGTAGAGAGCGCCAAGGCCATCCTGGGCGGAAGCAAGGTGCGCGTGGACC 1578 |||||||||| || || || ||||||||| |||| || ||| | || ||||| | Sbjct 10624876 CGGCCAAGGTAGTGGAATCTGCTAAGGCCATCTTGGGGGGTGCCAAAGGACGGGTGGATC 10624935 Query 1579 AAAAGTGCAAGTCATCGGCCCAGATCGACCCAACTCCCGTGATCGTCACCTCCAACACCA 1638 | || || || || || | || || || | || || || ||| | ||||||| | || Sbjct 10624936 ACAAATGTAAATCCTCCGTACAAATAGATGCCACCCCGGTCATCATTACCTCCAGTAGCA 10624995 Query 1639 ACATGTGCGCGGTCATCGACGGAAACTCGACCACCTTCGAGCACCAACAACCACTCCAGG 1698 ||||| || ||||||| ||||||||||| | ||| || ||| | || || | |||| Sbjct 10624996 ACATGGGCTGCATCATCGAGGGAAACTCGACGAACTTTGAACACGAGCAGCCGTTACAGG 10625055 Query 1699 ACCGGATGTTCAAGTTCGAGCTCACCAAGCGCCTGGAGCACGACTTTGGCAAGGTCACCA 1758 | |||||||| || || || || || | | || | |||||||| || | |||| Sbjct 10625056 ATCGGATGTTTAAATTTGAACTGACTCAAAGACTCATACGTGACTTTGGAAAAATTACCA 10625115 Query 1759 AGCAGGAAGTCAAAGACTTTTT 1780 | |||||||||||||||||||| Sbjct 10625116 AACAGGAAGTCAAAGACTTTTT 10625137 >seq3047 Length=5774023 Score = 78.8 bits (86), Expect = 3e-11 Identities = 121/171 (71%), Gaps = 5/171 (3%) Strand=Plus/Minus Query 1385 GGGTAAAACCAACATCGCGGAAGCCATCGCCCACGCCGTGCCCTTCTACGGCTGCGTGAA 1444 ||| ||||||||| ||||| | || | |||||||| | || ||||| |||||| | | Sbjct 5428569 GGGAAAAACCAACCTCGCG-AGGCTACTGCCCACGCTTTTCCGTTCTAGGGCTGCCTCAG 5428511 Query 1445 CTGGACCAATGAGAACTTTCCGTTCAACGATTGCGTCGACAAGATGGTGATCTGGTGGGA 1504 ||| | ||| |||||| |||| | ||| | || ||| || | | ||||||||| Sbjct 5428510 GTGGCCAAAT----ACTTTCGCTTCAGTGTCTGCCTGGAGAAGCTGATCAGCTGGTGGGA 5428455 Query 1505 GGAGGGCAAGATGACGGCCAAGGTCGTAGAGAGCGCCAAGGCCATCCTGGG 1555 |||||| |||| ||| | || || || |||||||||| | ||||| Sbjct 5428454 GGAGGGAAAGAGGACAGTGAAAACGGTGGAATCCGCCAAGGCCTTTCTGGG 5428404 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 15141879290720