Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cavia_20porcellus_20[refseq_20GCF_5F000151735.1_202008-03-03] 3,144 sequences; 2,723,219,641 total letters Query= NC_002077.1 Length=4718 Score E Sequences producing significant alignments: (Bits) Value seq3108 365 1e-97 seq3047 109 2e-20 >seq3108 Length=23989115 Score = 365 bits (404), Expect = 1e-97 Identities = 530/742 (71%), Gaps = 6/742 (1%) Strand=Plus/Plus Query 1004 TACATGGAGCTGGTCGGGTGGCTGGTGGACCGGGGCATCACCTCCGAGAAGCAGTGGATC 1063 ||||||| ||| || ||||||||||| | ||||| || ||| |||| |||||| Sbjct 10624400 TACATGGCTCTGATCATCTGGCTGGTGGAGAACCGTATCACGTCTGAGCAGCAATGGATC 10624459 Query 1064 CAGGAGGACCAGGCCTCGTACATCTCCTTCAACGC-CGCTTCCAACTCGCGGTCCCAGAT 1122 |||||| | || | || | || | | | || | ||| | | || ||||| Sbjct 10624460 CAGGAGAATCAAGAGAGTTATCTGTCGTATAGTGGACGGGT--AACGCTTGTTCTCAGAT 10624517 Query 1123 CAAGGCCGCTCTGGACAATGCCGGCAAGATCATGGCGCTGACCAAATCCGCGCCCGACTA 1182 ||||| ||| || |||||||| ||||||| ||| |||||||| | || | ||||| Sbjct 10624518 CAAGGTGGCTTTGAACAATGCCTGCAAGATTATGAACCTGACCAAGACAGCAGCGGACTA 10624577 Query 1183 CCTGGTAGGCCCCGCTCCGCCCGCGGACATTAAAACCAACCGCATCTACCGCATCCTGGA 1242 |||| ||| | | || | ||||| | ||| | || || ||| | | Sbjct 10624578 TTTGGTGGGCAAGGAGTCCCCTACCAACATTGAGGAAAACAGGATTTATCGCCTGTTTAG 10624637 Query 1243 GCTGAACGGCTACGAACCTGCCTACGCCGGCTCCGTCTTTCTCGGCTGGGCCCAGAAAAG 1302 ||||| || || || || ||||| | || ||| | | || |||||| || ||| | Sbjct 10624638 ACTGAATGGATATGATCCGGCCTATGGGGGATCCATACTGCTGGGCTGGTGTCA-AAAGG 10624696 Query 1303 GTTCGGG-AAGCGCAACACCATCTGGCTGTTTGGGCCGGCCACCACGGGCAAGACCAACA 1361 || || ||||| |||||| | ||| ||||||| |||| ||||| ||||||||||||| Sbjct 10624697 ACTCTGGCAAGCGAAACACCTTGTGGGTGTTTGGACCGGTGACCACAGGCAAGACCAACA 10624756 Query 1362 TCGCGGAAGCCATCGCCCACGCCGTGCCCTTCTACGGCTGCGTCAACTGGACCAATGAGA 1421 ||| ||| || ||||| || || || | ||| ||||| || || |||||||| ||||||| Sbjct 10624757 TCGTGGAGGC-ATCGCTCATGCTGTACGCTTTTACGGGTGTGTAAACTGGACTAATGAGA 10624815 Query 1422 ACTTTCCCTTCAATGATTGCGTCGACAAGATGGTGATCTGGTGGGAGGAGGGCAAGATGA 1481 ||||||||||||| | ||||||||||||||| | || |||||| |||| |||||||||| Sbjct 10624816 ACTTTCCCTTCAACAACTGCGTCGACAAGATGCTCATTTGGTGGAAGGAAGGCAAGATGA 10624875 Query 1482 CGGCCAAGGTCGTGGAGTCCGCCAAGGCCATTCTCGGCGGCAGCAAGGTGCGCGTGGACC 1541 |||||||||| ||||| || || |||||||| | || || ||| | || ||||| | Sbjct 10624876 CGGCCAAGGTAGTGGAATCTGCTAAGGCCATCTTGGGGGGTGCCAAAGGACGGGTGGATC 10624935 Query 1542 AAAAGTGCAAGTCGTCCGCCCAGATCGACCCCACCCCCGTGATCGTCACCTCCAACACCA 1601 | || || || || |||| || || || ||||||| || ||| | ||||||| | || Sbjct 10624936 ACAAATGTAAATCCTCCGTACAAATAGATGCCACCCCGGTCATCATTACCTCCAGTAGCA 10624995 Query 1602 ACATGTGCGCCGTGATTGACGGGAACAGCACCACCTTCGAGCACCAGCAGCCGTTGCAGG 1661 ||||| || | | || || || ||| || | ||| || ||| |||||||||| |||| Sbjct 10624996 ACATGGGCTGCATCATCGAGGGAAACTCGACGAACTTTGAACACGAGCAGCCGTTACAGG 10625055 Query 1662 ACCGGATGTTCAAATTTGAACTCACCCGCCGTCTGGAGCATGACTTTGGCAAGGTGACAA 1721 | |||||||| ||||||||||| || | | || | ||||||||| || | || | Sbjct 10625056 ATCGGATGTTTAAATTTGAACTGACTCAAAGACTCATACGTGACTTTGGAAAAATTACCA 10625115 Query 1722 AGCAGGAAGTCAAAGAGTTCTT 1743 | |||||||||||||| || || Sbjct 10625116 AACAGGAAGTCAAAGACTTTTT 10625137 >seq3047 Length=5774023 Score = 109 bits (120), Expect = 2e-20 Identities = 155/214 (72%), Gaps = 7/214 (3%) Strand=Plus/Minus Query 1329 TGTTTGGGCCGGCCACCACGGGCAAGACCAACATCGCGGAAGCCATCGCCCACGCCGTGC 1388 |||||| || | | || ||| || |||||| ||||| | || | |||||||| | | Sbjct 5428588 TGTTTGACCCTGGGATCATGGGAAAAACCAACCTCGCG-AGGCTACTGCCCACGCTTTTC 5428530 Query 1389 CCTTCTACGGCTGCGTCAACTGGACCAATGAGAACTTTCCCTTCAATGATTGCGTCGACA 1448 | ||||| |||||| ||| ||| | ||| |||||| ||||| || ||| | || | Sbjct 5428529 CGTTCTAGGGCTGCCTCAGGTGGCCAAAT----ACTTTCGCTTCAGTGTCTGCCTGGAGA 5428474 Query 1449 AGATGGTGATCTGGTGGGAGGAGGGCAAGATGACGGCCAAGGTCGTGGAGTCCGCCAAGG 1508 || || | | ||||||||||||||| |||| ||| | || ||||| |||||||||| Sbjct 5428473 AGCTGATCAGCTGGTGGGAGGAGGGAAAGAGGACAGTGAAAACGGTGGAATCCGCCAAGG 5428414 Query 1509 CCATTCTCGGCGGCAGCAAGGTGCGCGTGGACCA 1542 || |||| || ||||| || | | | ||||||| Sbjct 5428413 CCTTTCT-GGGGGCAGTGAGCT-CCCTTGGACCA 5428382 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 14985084682680