Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cavia_20porcellus_20[refseq_20GCF_5F000151735.1_202008-03-03] 3,144 sequences; 2,723,219,641 total letters Query= NC_004828.1 Length=4694 Score E Sequences producing significant alignments: (Bits) Value seq3108 260 4e-66 seq3047 100 8e-18 >seq3108 Length=23989115 Score = 260 bits (288), Expect = 4e-66 Identities = 330/450 (73%), Gaps = 9/450 (2%) Strand=Plus/Plus Query 1195 GGGTGGTGCCAGAAGAAATGGGGCAAGCGAAACACGCTGTGGCTGTTCGGACATGCGACC 1254 || ||||| || ||| | | |||||||||||||| ||||| |||| |||| | |||| Sbjct 10624681 GGCTGGTGTCAAAAGGACTCTGGCAAGCGAAACACCTTGTGGGTGTTTGGACCGGTGACC 10624740 Query 1255 ACCGGCAAGACCAACATCGCGGAGGCTATTGCCCATGCTGTGCCGTTCTATGGATGCGTT 1314 || |||||||||||||||| |||||| || || |||||||| | || || || || || Sbjct 10624741 ACAGGCAAGACCAACATCGTGGAGGC-ATCGCTCATGCTGTACGCTTTTACGGGTGTGTA 10624799 Query 1315 AACTGGACCAACGAGAACTTTCCGTTCAACGACTGCGTCGAAAAAATGATTATCTGGTGG 1374 |||||||| || ||||||||||| |||||| |||||||||| || ||| | || |||||| Sbjct 10624800 AACTGGACTAATGAGAACTTTCCCTTCAACAACTGCGTCGACAAGATGCTCATTTGGTGG 10624859 Query 1375 GAGGAGGGCAAAATGACCGCCAAAGTGGTGGAAACAGCCAAGGCGATTCTGGGAGGATCT 1434 |||| ||||| ||||| ||||| || |||||| | || ||||| || |||| || | Sbjct 10624860 AAGGAAGGCAAGATGACGGCCAAGGTAGTGGAATCTGCTAAGGCCATCTTGGGGGGTGCC 10624919 Query 1435 CGGGTGAGAGTGGACCAAAAATGCAAAGCTTCGGTTCCGATCGAACCGACGCCGGTCATT 1494 | | ||||| || ||||| ||| | || || | || || | || |||||||| Sbjct 10624920 AAAGGACGGGTGGATCACAAATGTAAATCCTCCGTACAAATAGATGCCACCCCGGTCATC 10624979 Query 1495 ATTACCAGTAACACCAACATGTGTTATGTCATCGACGGGAACACGACCACGTTCGAGCAT 1554 |||||| | | ||||||| | | ||||||| || ||| |||| | || || || Sbjct 10624980 ATTACCTCCAGTAGCAACATGGGCTGCATCATCGAGGGAAACTCGACGAACTTTGAACAC 10625039 Query 1555 AAGCAGCCGTTGGAGGACAGGATGTTTAAGCTCGAATTGCTGACTCGGTTGCCTGA---- 1610 |||||||||| |||| |||||||||| | ||| ||||||| | || | Sbjct 10625040 GAGCAGCCGTTACAGGATCGGATGTTTAAATTTGAA---CTGACTC-AAAGACTCATACG 10625095 Query 1611 TGACTTTGGTAAGGTGACCAAACAGGAGGT 1640 ||||||||| || | ||||||||||| || Sbjct 10625096 TGACTTTGGAAAAATTACCAAACAGGAAGT 10625125 >seq3047 Length=5774023 Score = 100 bits (110), Expect = 8e-18 Identities = 125/170 (74%), Gaps = 5/170 (3%) Strand=Plus/Minus Query 1258 GGCAAGACCAACATCGCGGAGGCTATTGCCCATGCTGTGCCGTTCTATGGATGCGTTAAC 1317 || || |||||| ||||| |||||| |||||| ||| | |||||||| || ||| | | Sbjct 5428568 GGAAAAACCAACCTCGCG-AGGCTACTGCCCACGCTTTTCCGTTCTAGGGCTGCCTCAGG 5428510 Query 1318 TGGACCAACGAGAACTTTCCGTTCAACGACTGCGTCGAAAAAATGATTATCTGGTGGGAG 1377 ||| | || |||||| |||| | |||| | || || |||| | |||||||||| Sbjct 5428509 TGGCCAAAT----ACTTTCGCTTCAGTGTCTGCCTGGAGAAGCTGATCAGCTGGTGGGAG 5428454 Query 1378 GAGGGCAAAATGACCGCCAAAGTGGTGGAAACAGCCAAGGCGATTCTGGG 1427 ||||| || | ||| | ||| ||||||| | |||||||| ||||||| Sbjct 5428453 GAGGGAAAGAGGACAGTGAAAACGGTGGAATCCGCCAAGGCCTTTCTGGG 5428404 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 14908287323640