Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Cavia_20porcellus_20[refseq_20GCF_5F000151735.1_202008-03-03]
3,144 sequences; 2,723,219,641 total letters
Query= NC_004828.1
Length=4694
Score E
Sequences producing significant alignments: (Bits) Value
seq3108 260 4e-66
seq3047 100 8e-18
>seq3108
Length=23989115
Score = 260 bits (288), Expect = 4e-66
Identities = 330/450 (73%), Gaps = 9/450 (2%)
Strand=Plus/Plus
Query 1195 GGGTGGTGCCAGAAGAAATGGGGCAAGCGAAACACGCTGTGGCTGTTCGGACATGCGACC 1254
|| ||||| || ||| | | |||||||||||||| ||||| |||| |||| | ||||
Sbjct 10624681 GGCTGGTGTCAAAAGGACTCTGGCAAGCGAAACACCTTGTGGGTGTTTGGACCGGTGACC 10624740
Query 1255 ACCGGCAAGACCAACATCGCGGAGGCTATTGCCCATGCTGTGCCGTTCTATGGATGCGTT 1314
|| |||||||||||||||| |||||| || || |||||||| | || || || || ||
Sbjct 10624741 ACAGGCAAGACCAACATCGTGGAGGC-ATCGCTCATGCTGTACGCTTTTACGGGTGTGTA 10624799
Query 1315 AACTGGACCAACGAGAACTTTCCGTTCAACGACTGCGTCGAAAAAATGATTATCTGGTGG 1374
|||||||| || ||||||||||| |||||| |||||||||| || ||| | || ||||||
Sbjct 10624800 AACTGGACTAATGAGAACTTTCCCTTCAACAACTGCGTCGACAAGATGCTCATTTGGTGG 10624859
Query 1375 GAGGAGGGCAAAATGACCGCCAAAGTGGTGGAAACAGCCAAGGCGATTCTGGGAGGATCT 1434
|||| ||||| ||||| ||||| || |||||| | || ||||| || |||| || |
Sbjct 10624860 AAGGAAGGCAAGATGACGGCCAAGGTAGTGGAATCTGCTAAGGCCATCTTGGGGGGTGCC 10624919
Query 1435 CGGGTGAGAGTGGACCAAAAATGCAAAGCTTCGGTTCCGATCGAACCGACGCCGGTCATT 1494
| | ||||| || ||||| ||| | || || | || || | || ||||||||
Sbjct 10624920 AAAGGACGGGTGGATCACAAATGTAAATCCTCCGTACAAATAGATGCCACCCCGGTCATC 10624979
Query 1495 ATTACCAGTAACACCAACATGTGTTATGTCATCGACGGGAACACGACCACGTTCGAGCAT 1554
|||||| | | ||||||| | | ||||||| || ||| |||| | || || ||
Sbjct 10624980 ATTACCTCCAGTAGCAACATGGGCTGCATCATCGAGGGAAACTCGACGAACTTTGAACAC 10625039
Query 1555 AAGCAGCCGTTGGAGGACAGGATGTTTAAGCTCGAATTGCTGACTCGGTTGCCTGA---- 1610
|||||||||| |||| |||||||||| | ||| ||||||| | || |
Sbjct 10625040 GAGCAGCCGTTACAGGATCGGATGTTTAAATTTGAA---CTGACTC-AAAGACTCATACG 10625095
Query 1611 TGACTTTGGTAAGGTGACCAAACAGGAGGT 1640
||||||||| || | ||||||||||| ||
Sbjct 10625096 TGACTTTGGAAAAATTACCAAACAGGAAGT 10625125
>seq3047
Length=5774023
Score = 100 bits (110), Expect = 8e-18
Identities = 125/170 (74%), Gaps = 5/170 (3%)
Strand=Plus/Minus
Query 1258 GGCAAGACCAACATCGCGGAGGCTATTGCCCATGCTGTGCCGTTCTATGGATGCGTTAAC 1317
|| || |||||| ||||| |||||| |||||| ||| | |||||||| || ||| | |
Sbjct 5428568 GGAAAAACCAACCTCGCG-AGGCTACTGCCCACGCTTTTCCGTTCTAGGGCTGCCTCAGG 5428510
Query 1318 TGGACCAACGAGAACTTTCCGTTCAACGACTGCGTCGAAAAAATGATTATCTGGTGGGAG 1377
||| | || |||||| |||| | |||| | || || |||| | ||||||||||
Sbjct 5428509 TGGCCAAAT----ACTTTCGCTTCAGTGTCTGCCTGGAGAAGCTGATCAGCTGGTGGGAG 5428454
Query 1378 GAGGGCAAAATGACCGCCAAAGTGGTGGAAACAGCCAAGGCGATTCTGGG 1427
||||| || | ||| | ||| ||||||| | |||||||| |||||||
Sbjct 5428453 GAGGGAAAGAGGACAGTGAAAACGGTGGAATCCGCCAAGGCCTTTCTGGG 5428404
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 14908287323640
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |