Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Cavia_20porcellus_20[refseq_20GCF_5F000151735.1_202008-03-03]
3,144 sequences; 2,723,219,641 total letters
Query= NC_005889.1
Length=4693
Score E
Sequences producing significant alignments: (Bits) Value
seq3108 370 3e-99
>seq3108
Length=23989115
Score = 370 bits (410), Expect = 3e-99
Identities = 535/753 (71%), Gaps = 6/753 (1%)
Strand=Plus/Plus
Query 1023 AATACATGGCGCTGGTAAGCTGGCTGGTGGAACATGGCATCACTTCCGAGAAGCAGTGGA 1082
|||||||||| ||| | | |||||||||||| | | ||||| || ||| |||| ||||
Sbjct 10624398 AATACATGGCTCTGATCATCTGGCTGGTGGAGAACCGTATCACGTCTGAGCAGCAATGGA 10624457
Query 1083 TTCAGGAGAATCAGGAGAGCTACCTGTCCTTCAACTCCACGGGAAACTCTCGGAGCCAGA 1142
| ||||||||||| ||||| || ||||| | | | ||||| ||| || | ||||
Sbjct 10624458 TCCAGGAGAATCAAGAGAGTTATCTGTCGTATAG-TGGACGGGTAACGCTTGTTCTCAGA 10624516
Query 1143 TTAAAGCCGCGCTTGACAACGCGTCAAAAATTATGAGTCTGACCAAATCTGCCTCAGACT 1202
| || | || | |||| || | || ||||||| |||||||| | || | ||||
Sbjct 10624517 TCAAGGTGGCTTTGAACAATGCCTGCAAGATTATGAACCTGACCAAGACAGCAGCGGACT 10624576
Query 1203 ATCTCGTGGGACAGACTGTTCCAGAGGA-CATTTCTGAAAACAGAATCTGGCAGATTTTT 1261
|| | ||||| || || || | | |||| |||||||| || | | | |||
Sbjct 10624577 ATTTGGTGGGCAAGGA-GTCCCCTACCAACATTGAGGAAAACAGGATTTATCGCCTGTTT 10624635
Query 1262 GATCTCAACGGCTACGACCCGGCATACGCGGGCTCTGTTCTCTACGGCTGGTG-CACTCG 1320
|| || || || || ||||| || | ||| || | || |||||||| || |
Sbjct 10624636 AGACTGAATGGATATGATCCGGCCTATGGGGGATCCATACTGCTGGGCTGGTGTCAAAAG 10624695
Query 1321 CGCCTTTGGAAAGAGGAACACCGTCTGGCTGTATGGACCCGCGACCACCGGAAAGACCAA 1380
| || ||| ||| | |||||| | ||| ||| |||||| | |||||| || ||||||||
Sbjct 10624696 -GACTCTGGCAAGCGAAACACCTTGTGGGTGTTTGGACCGGTGACCACAGGCAAGACCAA 10624754
Query 1381 CATCGCGGAAGCCATCTCTCACACCGTGCCCTTTTATGGCTGTGTGAACTGGACTAATGA 1440
||||| ||| || ||| |||| | || | |||||| || ||||| ||||||||||||||
Sbjct 10624755 CATCGTGGAGGC-ATCGCTCATGCTGTACGCTTTTACGGGTGTGTAAACTGGACTAATGA 10624813
Query 1441 GAACTTNNNNNNNNNNNNNNNNNNNGAAAAAATGTTGATCTGGTGGGAGGAGGGAAAGAT 1500
|||||| || || ||| | || |||||| |||| || |||||
Sbjct 10624814 GAACTTTCCCTTCAACAACTGCGTCGACAAGATGCTCATTTGGTGGAAGGAAGGCAAGAT 10624873
Query 1501 GACCAGCAAGGTGGTGGAACCCGCCAAGGCCATCTTgggggggTCTAGAGTACGAGTGGA 1560
||| |||||| |||||| | || ||||||||||||||||| | | || ||| |||||
Sbjct 10624874 GACGGCCAAGGTAGTGGAATCTGCTAAGGCCATCTTGGGGGGTGCCAAAGGACGGGTGGA 10624933
Query 1561 TCAAAAATGTAAATCCTCTGTACAAGTAGACTCTACCCCGGTGATTATCACCTCCAATAC 1620
||| |||||||||||||| |||||| |||| | |||||||| || || ||||||| ||
Sbjct 10624934 TCACAAATGTAAATCCTCCGTACAAATAGATGCCACCCCGGTCATCATTACCTCCAGTAG 10624993
Query 1621 TAACATGTGTGTGGTGGTGGATGGGAACTCCACGACCTTTGAACACCAGCAGCCGCTGGA 1680
|||||| | | | || || ||||| |||| |||||||||| |||||||| | |
Sbjct 10624994 CAACATGGGCTGCATCATCGAGGGAAACTCGACGAACTTTGAACACGAGCAGCCGTTACA 10625053
Query 1681 AGACCGCATGTTCAGATTTGAACTCATGCGGCGGCTCCCGCCAGATTTTGGCAAGATTAC 1740
|| || ||||| | ||||||||| | | | ||| | || ||||| || |||||
Sbjct 10625054 GGATCGGATGTTTAAATTTGAACTGACTCAAAGACTCATACGTGACTTTGGAAAAATTAC 10625113
Query 1741 CAAGCAGGAAGTCAAAGACTTTTTTGCTTGGGC 1773
||| |||||||||||||||||||| || | |||
Sbjct 10625114 CAAACAGGAAGTCAAAGACTTTTTGGCGTAGGC 10625146
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 14905087433680
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |