Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cavia_20porcellus_20[refseq_20GCF_5F000151735.1_202008-03-03] 3,144 sequences; 2,723,219,641 total letters Query= NC_005889.1 Length=4693 Score E Sequences producing significant alignments: (Bits) Value seq3108 370 3e-99 >seq3108 Length=23989115 Score = 370 bits (410), Expect = 3e-99 Identities = 535/753 (71%), Gaps = 6/753 (1%) Strand=Plus/Plus Query 1023 AATACATGGCGCTGGTAAGCTGGCTGGTGGAACATGGCATCACTTCCGAGAAGCAGTGGA 1082 |||||||||| ||| | | |||||||||||| | | ||||| || ||| |||| |||| Sbjct 10624398 AATACATGGCTCTGATCATCTGGCTGGTGGAGAACCGTATCACGTCTGAGCAGCAATGGA 10624457 Query 1083 TTCAGGAGAATCAGGAGAGCTACCTGTCCTTCAACTCCACGGGAAACTCTCGGAGCCAGA 1142 | ||||||||||| ||||| || ||||| | | | ||||| ||| || | |||| Sbjct 10624458 TCCAGGAGAATCAAGAGAGTTATCTGTCGTATAG-TGGACGGGTAACGCTTGTTCTCAGA 10624516 Query 1143 TTAAAGCCGCGCTTGACAACGCGTCAAAAATTATGAGTCTGACCAAATCTGCCTCAGACT 1202 | || | || | |||| || | || ||||||| |||||||| | || | |||| Sbjct 10624517 TCAAGGTGGCTTTGAACAATGCCTGCAAGATTATGAACCTGACCAAGACAGCAGCGGACT 10624576 Query 1203 ATCTCGTGGGACAGACTGTTCCAGAGGA-CATTTCTGAAAACAGAATCTGGCAGATTTTT 1261 || | ||||| || || || | | |||| |||||||| || | | | ||| Sbjct 10624577 ATTTGGTGGGCAAGGA-GTCCCCTACCAACATTGAGGAAAACAGGATTTATCGCCTGTTT 10624635 Query 1262 GATCTCAACGGCTACGACCCGGCATACGCGGGCTCTGTTCTCTACGGCTGGTG-CACTCG 1320 || || || || || ||||| || | ||| || | || |||||||| || | Sbjct 10624636 AGACTGAATGGATATGATCCGGCCTATGGGGGATCCATACTGCTGGGCTGGTGTCAAAAG 10624695 Query 1321 CGCCTTTGGAAAGAGGAACACCGTCTGGCTGTATGGACCCGCGACCACCGGAAAGACCAA 1380 | || ||| ||| | |||||| | ||| ||| |||||| | |||||| || |||||||| Sbjct 10624696 -GACTCTGGCAAGCGAAACACCTTGTGGGTGTTTGGACCGGTGACCACAGGCAAGACCAA 10624754 Query 1381 CATCGCGGAAGCCATCTCTCACACCGTGCCCTTTTATGGCTGTGTGAACTGGACTAATGA 1440 ||||| ||| || ||| |||| | || | |||||| || ||||| |||||||||||||| Sbjct 10624755 CATCGTGGAGGC-ATCGCTCATGCTGTACGCTTTTACGGGTGTGTAAACTGGACTAATGA 10624813 Query 1441 GAACTTNNNNNNNNNNNNNNNNNNNGAAAAAATGTTGATCTGGTGGGAGGAGGGAAAGAT 1500 |||||| || || ||| | || |||||| |||| || ||||| Sbjct 10624814 GAACTTTCCCTTCAACAACTGCGTCGACAAGATGCTCATTTGGTGGAAGGAAGGCAAGAT 10624873 Query 1501 GACCAGCAAGGTGGTGGAACCCGCCAAGGCCATCTTgggggggTCTAGAGTACGAGTGGA 1560 ||| |||||| |||||| | || ||||||||||||||||| | | || ||| ||||| Sbjct 10624874 GACGGCCAAGGTAGTGGAATCTGCTAAGGCCATCTTGGGGGGTGCCAAAGGACGGGTGGA 10624933 Query 1561 TCAAAAATGTAAATCCTCTGTACAAGTAGACTCTACCCCGGTGATTATCACCTCCAATAC 1620 ||| |||||||||||||| |||||| |||| | |||||||| || || ||||||| || Sbjct 10624934 TCACAAATGTAAATCCTCCGTACAAATAGATGCCACCCCGGTCATCATTACCTCCAGTAG 10624993 Query 1621 TAACATGTGTGTGGTGGTGGATGGGAACTCCACGACCTTTGAACACCAGCAGCCGCTGGA 1680 |||||| | | | || || ||||| |||| |||||||||| |||||||| | | Sbjct 10624994 CAACATGGGCTGCATCATCGAGGGAAACTCGACGAACTTTGAACACGAGCAGCCGTTACA 10625053 Query 1681 AGACCGCATGTTCAGATTTGAACTCATGCGGCGGCTCCCGCCAGATTTTGGCAAGATTAC 1740 || || ||||| | ||||||||| | | | ||| | || ||||| || ||||| Sbjct 10625054 GGATCGGATGTTTAAATTTGAACTGACTCAAAGACTCATACGTGACTTTGGAAAAATTAC 10625113 Query 1741 CAAGCAGGAAGTCAAAGACTTTTTTGCTTGGGC 1773 ||| |||||||||||||||||||| || | ||| Sbjct 10625114 CAAACAGGAAGTCAAAGACTTTTTGGCGTAGGC 10625146 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 14905087433680