Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Cavia_20porcellus_20[refseq_20GCF_5F000151735.1_202008-03-03]
3,144 sequences; 2,723,219,641 total letters
Query= NC_006147.2
Length=5132
Score E
Sequences producing significant alignments: (Bits) Value
seq3108 159 1e-35
seq3047 84.2 7e-13
>seq3108
Length=23989115
Score = 159 bits (176), Expect = 1e-35
Identities = 167/218 (77%), Gaps = 1/218 (0%)
Strand=Plus/Plus
Query 1553 GGACCTGCGACCACCGGAAAGACCAACATAGCCGAGGCTATTGCCCATGCTGTACCCTTC 1612
||||| | |||||| || ||||||||||| | ||||| || || |||||||||| |||
Sbjct 10624729 GGACCGGTGACCACAGGCAAGACCAACATCGTGGAGGC-ATCGCTCATGCTGTACGCTTT 10624787
Query 1613 TATGGCTGTGTTAACTGGACTAATGAGAACTTCCCATTTAATGACTGCGTTGATAAAATG 1672
|| || ||||| |||||||||||||||||||| || || || ||||||| || || |||
Sbjct 10624788 TACGGGTGTGTAAACTGGACTAATGAGAACTTTCCCTTCAACAACTGCGTCGACAAGATG 10624847
Query 1673 CTTATATGGTGGGAGGAGGGAAAAATGACCAATAAAGTAGTGGAATCCGCAAAAGCGATA 1732
|| || |||||| |||| || || ||||| || ||||||||||| || || || ||
Sbjct 10624848 CTCATTTGGTGGAAGGAAGGCAAGATGACGGCCAAGGTAGTGGAATCTGCTAAGGCCATC 10624907
Query 1733 CTgggggggTCTGCTGTACGAGTTGATCAAAAGTGTAA 1770
||||||| | | ||| || ||||| || |||||
Sbjct 10624908 TTGGGGGGTGCCAAAGGACGGGTGGATCACAAATGTAA 10624945
>seq3047
Length=5774023
Score = 84.2 bits (92), Expect = 7e-13
Identities = 130/184 (71%), Gaps = 5/184 (3%)
Strand=Plus/Minus
Query 1556 CCTGCGACCACCGGAAAGACCAACATAGCCGAGGCTATTGCCCATGCTGTACCCTTCTAT 1615
|||| || || ||||| |||||| | || ||||||| |||||| ||| | || |||||
Sbjct 5428580 CCTGGGATCATGGGAAAAACCAACCTCGC-GAGGCTACTGCCCACGCTTTTCCGTTCTAG 5428522
Query 1616 GGCTGTGTTAACTGGACTAATGAGAACTTCCCATTTAATGACTGCGTTGATAAAATGCTT 1675
||||| | | ||| | ||| |||| | || | || |||| | || || || |
Sbjct 5428521 GGCTGCCTCAGGTGGCCAAAT----ACTTTCGCTTCAGTGTCTGCCTGGAGAAGCTGATC 5428466
Query 1676 ATATGGTGGGAGGAGGGAAAAATGACCAATAAAGTAGTGGAATCCGCAAAAGCGATACTg 1735
| ||||||||||||||||| | ||| ||| ||||||||||| || || | |||
Sbjct 5428465 AGCTGGTGGGAGGAGGGAAAGAGGACAGTGAAAACGGTGGAATCCGCCAAGGCCTTTCTG 5428406
Query 1736 gggg 1739
||||
Sbjct 5428405 GGGG 5428402
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 16309839126120
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |