Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cavia_20porcellus_20[refseq_20GCF_5F000151735.1_202008-03-03] 3,144 sequences; 2,723,219,641 total letters Query= NC_006147.2 Length=5132 Score E Sequences producing significant alignments: (Bits) Value seq3108 159 1e-35 seq3047 84.2 7e-13 >seq3108 Length=23989115 Score = 159 bits (176), Expect = 1e-35 Identities = 167/218 (77%), Gaps = 1/218 (0%) Strand=Plus/Plus Query 1553 GGACCTGCGACCACCGGAAAGACCAACATAGCCGAGGCTATTGCCCATGCTGTACCCTTC 1612 ||||| | |||||| || ||||||||||| | ||||| || || |||||||||| ||| Sbjct 10624729 GGACCGGTGACCACAGGCAAGACCAACATCGTGGAGGC-ATCGCTCATGCTGTACGCTTT 10624787 Query 1613 TATGGCTGTGTTAACTGGACTAATGAGAACTTCCCATTTAATGACTGCGTTGATAAAATG 1672 || || ||||| |||||||||||||||||||| || || || ||||||| || || ||| Sbjct 10624788 TACGGGTGTGTAAACTGGACTAATGAGAACTTTCCCTTCAACAACTGCGTCGACAAGATG 10624847 Query 1673 CTTATATGGTGGGAGGAGGGAAAAATGACCAATAAAGTAGTGGAATCCGCAAAAGCGATA 1732 || || |||||| |||| || || ||||| || ||||||||||| || || || || Sbjct 10624848 CTCATTTGGTGGAAGGAAGGCAAGATGACGGCCAAGGTAGTGGAATCTGCTAAGGCCATC 10624907 Query 1733 CTgggggggTCTGCTGTACGAGTTGATCAAAAGTGTAA 1770 ||||||| | | ||| || ||||| || ||||| Sbjct 10624908 TTGGGGGGTGCCAAAGGACGGGTGGATCACAAATGTAA 10624945 >seq3047 Length=5774023 Score = 84.2 bits (92), Expect = 7e-13 Identities = 130/184 (71%), Gaps = 5/184 (3%) Strand=Plus/Minus Query 1556 CCTGCGACCACCGGAAAGACCAACATAGCCGAGGCTATTGCCCATGCTGTACCCTTCTAT 1615 |||| || || ||||| |||||| | || ||||||| |||||| ||| | || ||||| Sbjct 5428580 CCTGGGATCATGGGAAAAACCAACCTCGC-GAGGCTACTGCCCACGCTTTTCCGTTCTAG 5428522 Query 1616 GGCTGTGTTAACTGGACTAATGAGAACTTCCCATTTAATGACTGCGTTGATAAAATGCTT 1675 ||||| | | ||| | ||| |||| | || | || |||| | || || || | Sbjct 5428521 GGCTGCCTCAGGTGGCCAAAT----ACTTTCGCTTCAGTGTCTGCCTGGAGAAGCTGATC 5428466 Query 1676 ATATGGTGGGAGGAGGGAAAAATGACCAATAAAGTAGTGGAATCCGCAAAAGCGATACTg 1735 | ||||||||||||||||| | ||| ||| ||||||||||| || || | ||| Sbjct 5428465 AGCTGGTGGGAGGAGGGAAAGAGGACAGTGAAAACGGTGGAATCCGCCAAGGCCTTTCTG 5428406 Query 1736 gggg 1739 |||| Sbjct 5428405 GGGG 5428402 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 16309839126120