Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cavia_20porcellus_20[refseq_20GCF_5F000151735.1_202008-03-03] 3,144 sequences; 2,723,219,641 total letters Query= NC_006148.1 Length=4432 Score E Sequences producing significant alignments: (Bits) Value seq3108 111 4e-21 >seq3108 Length=23989115 Score = 111 bits (122), Expect = 4e-21 Identities = 154/211 (73%), Gaps = 5/211 (2%) Strand=Plus/Plus Query 1269 AAGAACTTTGGCAAGAGAAACACCATCTGGCTGTATGGTCCAGCTACTACCGGCAAAACC 1328 ||| ||| ||||||| |||||||| | ||| ||| ||| || | || || ||||| ||| Sbjct 10624693 AAGGACTCTGGCAAGCGAAACACCTTGTGGGTGTTTGGACCGGTGACCACAGGCAAGACC 10624752 Query 1329 ATCATCGCTCAAGCTATTGCACATGCTGTTAAACTGTTTGCTGGTGTT--AATTGGACTA 1386 | ||||| | || || || |||||||| | || ||| | ||||| || ||||||| Sbjct 10624753 AACATCGTGGAGGC-ATCGCTCATGCTGT-ACGCT-TTTACGGGTGTGTAAACTGGACTA 10624809 Query 1387 ATGAAAACTTTCCCTTCTGTAACTGTCCAGGGAAACTGCTTATCTGGTGGGAGGAGGGCA 1446 |||| |||||||||||| ||||| | || |||| || |||||| |||| |||| Sbjct 10624810 ATGAGAACTTTCCCTTCAACAACTGCGTCGACAAGATGCTCATTTGGTGGAAGGAAGGCA 10624869 Query 1447 AGATGACAAACAAAATGGTGGAGACGGCTAA 1477 ||||||| ||| | ||||| | ||||| Sbjct 10624870 AGATGACGGCCAAGGTAGTGGAATCTGCTAA 10624900 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 14069916154120