Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cavia_20porcellus_20[refseq_20GCF_5F000151735.1_202008-03-03] 3,144 sequences; 2,723,219,641 total letters Query= NC_006152.1 Length=4642 Score E Sequences producing significant alignments: (Bits) Value seq3108 444 2e-121 seq3047 98.7 3e-17 seq3075 96.9 1e-16 >seq3108 Length=23989115 Score = 444 bits (492), Expect = 2e-121 Identities = 952/1394 (68%), Gaps = 64/1394 (5%) Strand=Plus/Plus Query 404 GAGGAACATCTGCCTGGAATTTCTGACAGCTTTGTGGACTGGGTAACTGGTCAAATT-TG 462 ||||||||| ||||| | ||| | ||||| |||||||||||| | | || |||| || Sbjct 10623784 GAGGAACATTTGCCTAGCATTCCAGACAGATTTGTGGACTGGATTA-TGAACAAAGAATG 10623842 Query 463 GGAGCTGCCTCCAGAGTCAGATTTAAATTTGACTCTGGTTGAACAGCCTCAGTTGACGGT 522 ||| ||||||| ||||||||||| | || | || | || || | ||||| | Sbjct 10623843 GGAATTGCCTCCCGAGTCAGATTTTGACATGGATTTGATCGAGACTCCAAAATTGACTAT 10623902 Query 523 GGCTGATAGAATTCGCCGCGTGTTCCTGTACGAGTGGAACAAATTTTCCAAGCAGGAGTC 582 || || | ||||| | | |||| || || |||| ||| || |||| | || | Sbjct 10623903 CGCGGAAAAAATTCAGAGTGAGTTCTTGGTGGAATGGAGGAAAATTACCAAAAATGATCC 10623962 Query 583 CAAATTCTTTGTGCAGTTTGAAAAGGGATCTGAATATTTTCATCTGCACACGCTTGTGGA 642 |||| ||| | ||||||||||| ||| || || |||| | |||||||| | |||| Sbjct 10623963 GGAATTTTTTATTCAGTTTGAAAAAGGA-CT--ATTTTTTTACCTGCACACACATGTGAG 10624019 Query 643 GACCTCCGGCATCTCTTCCATGGTCCTCGGCCGCTACGTGAGTCAGATTCGCGCCCAGCT 702 ||| ||||| || ||||| | ||| | || ||| ||| || || | || Sbjct 10624020 TACCGATGGCATGAAATCTATGGTGTTGGGCAGATATTTGAATCAAATCTGCCAAAAACT 10624079 Query 703 GGTGAAAG--TG--GTCTTCCAGGGAAT-TGAACCC-CAGATCAACGACTGGGTCGCCAT 756 |||| || || || | ||| || ||| || || |||||| | || | Sbjct 10624080 ----AAAGGCTGACGTGTTTAAA--AATGTGGTCCCACACATTCCTGACTGGATGGCAGT 10624133 Query 757 CACCAAGGTAAAGAAGGGCGGAGCCAATAAGGTGGTGGATTC----TGGGTATATTCCCG 812 || || || | ||| |||||| | || ||||| ||| ||| |||| Sbjct 10624134 GACAAAAACCAAACACAACGGCGCCAATCGGCTGAGGGATTAAAAATGG---TATCCCCG 10624190 Query 813 CCTACCTGCTGCCGAAGGTCCAACCGGAGCTTCAGTGGGCGTGGACAAACCTGGACGAGT 872 ||||||| | || ||| |||||| || | || |||| |||||| || |||| || | Sbjct 10624191 CCTACCTTTTACCCAAGAACCAACCAGAATTGCAATGGGTGTGGACCAATATGGAGGACT 10624250 Query 873 ATAAATTGGCCGCCCTGAATCTGGAGGAGCGCAAACGGCTCGTCGCGCAGTTTCTG---- 928 || |||| || ||| | || ||| ||||| |||| || | | || |||| Sbjct 10624251 ATC------CCGCGCTTAATTTAGAAGAGTGCAAATGGCTGGT-GAG-AGAGTCTGCGGA 10624302 Query 929 GCAGAATCCTCGCAGCGCTCGCAGGAGGCGGCTTCGCAGCG---TGAGTTC---TCGGCT 982 |||| | | | || | |||| | || |||| || |||| | || || Sbjct 10624303 GCAGCAGCGT-GCTG-GCTCACTCGAAAATACTTCTCAAGAATCTGAGCTAAATTCTTCT 10624360 Query 983 GACCCGG-TCATCAAAA-----GCAAGACTTCCCAGA-AATACATGGCGCTCGTCAACTG 1035 || | || ||||| |||| | | ||| | |||||||||| || ||| ||| Sbjct 10624361 GAAGATGCTCCCCAAAACAGGAGCAA-ATGTACCACACAATACATGGCTCTGATCATCTG 10624419 Query 1036 GCTCGTGGAGCACGGCATCACTTCCGAGAAGCAGTGGATCCAGGAAAATCAGGAGAGCTA 1095 ||| |||||| || | ||||| || ||| |||| ||||||||||| ||||| ||||| || Sbjct 10624420 GCTGGTGGAGAACCGTATCACGTCTGAGCAGCAATGGATCCAGGAGAATCAAGAGAGTTA 10624479 Query 1096 CCTCTCCTTCAACTCCACCGGCAACTCTCGGAGCCAGATCAAGGCCGCGCTCGACAACGC 1155 || || | | | || || ||| || | |||||||||| || | |||| || Sbjct 10624480 TCTGTCGTATAG-TGGACGGGTAACGCTTGTTCTCAGATCAAGGTGGCTTTGAACAATGC 10624538 Query 1156 GACCAAAATTATGAGTCTGACAAAAAGCGCGGTGGACTACCTCGTGGG----GAGCTCCG 1211 ||| ||||||| ||||| || | || | |||||| | ||||| ||| || Sbjct 10624539 CTGCAAGATTATGAACCTGACCAAGACAGCAGCGGACTATTTGGTGGGCAAGGAGTCCCC 10624598 Query 1212 TTCCCGAGGACATTTCAAAAAACAGAATCTGGCAAATTTTTGAGA-TGAATGGCTACGAC 1270 | || ||||| ||||||| || | | | ||| ||| ||||||| || || Sbjct 10624599 TACCA----ACATTGAGGAAAACAGGATTTATCGCCTGTTT-AGACTGAATGGATATGAT 10624653 Query 1271 CCGGCCTACGCGGGATCCATCCTCTACGGCTGGTGTCAGCGCTCCTTCAACAAGAGGAAC 1330 |||||||| | ||||||||| || ||||||||||| || |||| | ||| Sbjct 10624654 CCGGCCTATGGGGGATCCATACTGCTGGGCTGGTGTCAAAAGGACTCTGGCAAGCGAAAC 10624713 Query 1331 ACCGTCTGGCTCTACGGACCCGCCACGACCGGCAAGACCAACATCGCGGAGGCCATCGCC 1390 ||| | ||| | | ||||| | || || |||||||||||||||| |||||| ||||| Sbjct 10624714 ACCTTGTGGGTGTTTGGACCGGTGACCACAGGCAAGACCAACATCGTGGAGGC-ATCGCT 10624772 Query 1391 CACACTGTGCCCTTTTACGGCTGCGTGAACTGGACCAATGAAAACTTTCCCTTTAATGAC 1450 || |||| | ||||||||| || || |||||||| ||||| ||||||||||| || || Sbjct 10624773 CATGCTGTACGCTTTTACGGGTGTGTAAACTGGACTAATGAGAACTTTCCCTTCAACAAC 10624832 Query 1451 TGTGTGGACAAAATGCTCATTTGGTGGGAGGAGGGAAAGATGACCAACAAGGTGGTTGAA 1510 || || ||||| ||||||||||||||| |||| || |||||||| |||||| || ||| Sbjct 10624833 TGCGTCGACAAGATGCTCATTTGGTGGAAGGAAGGCAAGATGACGGCCAAGGTAGTGGAA 10624892 Query 1511 TCCGCCAAGGCCATCCTGGGGGGCTCAAAGGTGCGGGTCGATCAGAAATGTAAATCCTCT 1570 || || ||||||||| ||||||| | || | ||||| ||||| |||||||||||||| Sbjct 10624893 TCTGCTAAGGCCATCTTGGGGGGTGCCAAAGGACGGGTGGATCACAAATGTAAATCCTCC 10624952 Query 1571 GTTCAAATTGATTCTACCCCTGTCATTGTAACTTCCAATACAAACATGTGTGTGGTGGTG 1630 || ||||| ||| | ||||| ||||| | || |||| || |||||| | | | Sbjct 10624953 GTACAAATAGATGCCACCCCGGTCATCATTACCTCCAGTAGCAACATGGGCTGCATCATC 10625012 Query 1631 GATGGGAATTCCACGACCTTTGAACACCAGCAGCCGCTGGAGGACCGCATGTTCAAATTT 1690 || || || || |||| |||||||||| |||||||| | |||| || ||||| |||||| Sbjct 10625013 GAGGGAAACTCGACGAACTTTGAACACGAGCAGCCGTTACAGGATCGGATGTTTAAATTT 10625072 Query 1691 GAACTGACTAAGCGGCTCCCGCCAGATTTTGGCAAGATTACTAAGCAGGAAGTCAAGGAC 1750 ||||||||| | | ||| | || ||||| || ||||| || ||||||||||| ||| Sbjct 10625073 GAACTGACTCAAAGACTCATACGTGACTTTGGAAAAATTACCAAACAGGAAGTCAAAGAC 10625132 Query 1751 TTTTTTGCTTGGGC 1764 ||||| || | ||| Sbjct 10625133 TTTTTGGCGTAGGC 10625146 >seq3047 Length=5774023 Score = 98.7 bits (108), Expect = 3e-17 Identities = 126/172 (73%), Gaps = 5/172 (3%) Strand=Plus/Minus Query 1361 GGCAAGACCAACATCGCGGAGGCCATCGCCCACACTGTGCCCTTTTACGGCTGCGTGAAC 1420 || || |||||| ||||| |||| | |||||| || | || || || |||||| | | Sbjct 5428568 GGAAAAACCAACCTCGCG-AGGCTACTGCCCACGCTTTTCCGTTCTAGGGCTGCCTCAGG 5428510 Query 1421 TGGACCAATGAAAACTTTCCCTTTAATGACTGTGTGGACAAAATGCTCATTTGGTGGGAG 1480 ||| | ||| |||||| ||| | || ||| |||| || || ||| ||||||||| Sbjct 5428509 TGGCCAAAT----ACTTTCGCTTCAGTGTCTGCCTGGAGAAGCTGATCAGCTGGTGGGAG 5428454 Query 1481 GAGGGAAAGATGACCAACAAGGTGGTTGAATCCGCCAAGGCCATCCTGGGGG 1532 |||||||||| ||| || ||| ||||||||||||||| | ||||||| Sbjct 5428453 GAGGGAAAGAGGACAGTGAAAACGGTGGAATCCGCCAAGGCCTTTCTGGGGG 5428402 >seq3075 Length=9373556 Score = 96.9 bits (106), Expect = 1e-16 Identities = 180/260 (69%), Gaps = 6/260 (2%) Strand=Plus/Minus Query 4055 CACTTTCACCCCTCTCCGGCCATGGGCGGATTCGGACTCAAACACCCACCGCCCATGATG 4114 |||||||| || ||| |||||| |||| || ||| | | || |||||| || Sbjct 509315 CACTTTCATCCTAGTCCTTACATGGGTGGATCAGGTTTCAGAAGACTACGTCCCATGTTG 509256 Query 4115 CTCA-TCAAGAACACGCCTGTGCCCGGAAATATCACCAGCTTCTCGGACGTGCCCGTCAG 4173 || | |||| |||| || || || ||||| |||||| ||| ||| | | ||||| Sbjct 509255 CTGAATCAAAAACATGCTGGTTCCTAGAAATGTCACCACATTCATGGAACAGACAGTCAG 509196 Query 4174 CAGCTTCATCACCCAGTACAGCACCGGGCAGGTCACCGTGGAGATGGAGTGGGAGCTCAA 4233 ||||| |||||||| || || || || || || || ||| || ||||||| Sbjct 509195 TTCTTTCATAACCCAGTATTTAACTGGTCAAGTGACAGTAGAAATGATATGAAAGCTCAA 509136 Query 4234 GAAGGAAAACTCCAAGAGGTGGAACCCAGAGATCCAGTACACAAACAACTACAACGACCC 4293 | |||||||||||| |||||| ||||| || |||||| | |||||||||| | | Sbjct 509135 ACAAGAAAACTCCAAGTTGTGGAATCCAGAAATGCAGTAC---ATCAACTACAAC-AGTC 509080 Query 4294 CCAGTT-TGTGGACTTTGCC 4312 | | || |||| | |||||| Sbjct 509079 CTACTTGTGTGAATTTTGCC 509060 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 14741893045720