Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Cavia_20porcellus_20[refseq_20GCF_5F000151735.1_202008-03-03]
3,144 sequences; 2,723,219,641 total letters
Query= NC_006260.1
Length=4721
Score E
Sequences producing significant alignments: (Bits) Value
seq3108 352 9e-94
seq3047 95.1 4e-16
>seq3108
Length=23989115
Score = 352 bits (390), Expect = 9e-94
Identities = 525/741 (71%), Gaps = 4/741 (1%)
Strand=Plus/Plus
Query 1003 TACATGGAGCTGGTCGGGTGGCTGGTGGACCGGGGCATCACCTCCGAGAAGCAGTGGATC 1062
||||||| ||| || ||||||||||| | ||||| || ||| |||| ||||||
Sbjct 10624400 TACATGGCTCTGATCATCTGGCTGGTGGAGAACCGTATCACGTCTGAGCAGCAATGGATC 10624459
Query 1063 CAGGAGGACCAGGCCTCGTACATCTCCTTCAACGC-CGCCTCCAACTCGCGGTCCCAGAT 1121
|||||| | || | || | || | | | || | ||| | | || |||||
Sbjct 10624460 CAGGAGAATCAAGAGAGTTATCTGTCGTATAGTGGACGGGT--AACGCTTGTTCTCAGAT 10624517
Query 1122 CAAGGCCGCGCTGGACAATGCCGGCAAGATCATGGCGCTGACCAAATCCGCGCCCGACTA 1181
||||| || || |||||||| ||||||| ||| |||||||| | || | |||||
Sbjct 10624518 CAAGGTGGCTTTGAACAATGCCTGCAAGATTATGAACCTGACCAAGACAGCAGCGGACTA 10624577
Query 1182 CCTGGTGGGGCCCTCGCTGCCCGCGGACATTAAAACCAACCGCATCTACCGCATCCTGGA 1241
||||||| | || | ||||| | ||| | || || ||| | |
Sbjct 10624578 TTTGGTGGGCAAGGAGTCCCCTACCAACATTGAGGAAAACAGGATTTATCGCCTGTTTAG 10624637
Query 1242 GCTGAACGGGTACGATCCTGCCTACGCCGGCTCCGTCTTTCTCGGCTGGGCCCAGAAAAA 1301
||||| || || ||||| ||||| | || ||| | | || |||||| || || |
Sbjct 10624638 ACTGAATGGATATGATCCGGCCTATGGGGGATCCATACTGCTGGGCTGGTGTCAAAAGGA 10624697
Query 1302 GTTCGGGAAGCGCAACACCATCTGGCTGTTTGGGCCCGCCACCACCGGCAAGACCAACAT 1361
| || ||||| |||||| | ||| ||||||| || | ||||| ||||||||||||||
Sbjct 10624698 CTCTGGCAAGCGAAACACCTTGTGGGTGTTTGGACCGGTGACCACAGGCAAGACCAACAT 10624757
Query 1362 TGCGGAAGCCATCGCCCACGCCGTGCCCTTCTACGGCTGCGTCAACTGGACCAATGAGAA 1421
| ||| || ||||| || || || | ||| ||||| || || |||||||| ||||||||
Sbjct 10624758 CGTGGAGGC-ATCGCTCATGCTGTACGCTTTTACGGGTGTGTAAACTGGACTAATGAGAA 10624816
Query 1422 CTTTCCCTTCAACGATTGCGTCGACAAGATGGTGATCTGGTGGGAGGAGGGCAAGATGAC 1481
||||||||||||| | ||||||||||||||| | || |||||| |||| |||||||||||
Sbjct 10624817 CTTTCCCTTCAACAACTGCGTCGACAAGATGCTCATTTGGTGGAAGGAAGGCAAGATGAC 10624876
Query 1482 GGCCAAGGTCGTGGAGTCCGCCAAGGCCATTCTCGGCGGCAGCAAGGTGCGCGTGGACCA 1541
||||||||| ||||| || || |||||||| | || || ||| | || ||||| ||
Sbjct 10624877 GGCCAAGGTAGTGGAATCTGCTAAGGCCATCTTGGGGGGTGCCAAAGGACGGGTGGATCA 10624936
Query 1542 AAAGTGCAAGTCGTCCGCCCAGATCGACCCCACCCCCGTGATCGTCACCTCCAACACCAA 1601
|| || || || |||| || || || ||||||| || ||| | ||||||| | |||
Sbjct 10624937 CAAATGTAAATCCTCCGTACAAATAGATGCCACCCCGGTCATCATTACCTCCAGTAGCAA 10624996
Query 1602 CATGTGCGCCGTGATTGACGGGAACAGCACCACCTTCGAGCACCAGCAGCCGTTGCAGGA 1661
|||| || | | || || || ||| || | ||| || ||| |||||||||| |||||
Sbjct 10624997 CATGGGCTGCATCATCGAGGGAAACTCGACGAACTTTGAACACGAGCAGCCGTTACAGGA 10625056
Query 1662 CCGGATGTTCAAATTTGAACTCACCCGCCGTCTGGAGCACGACTTTGGCAAGGTGACGAA 1721
|||||||| ||||||||||| || | | || | |||||||| || | || ||
Sbjct 10625057 TCGGATGTTTAAATTTGAACTGACTCAAAGACTCATACGTGACTTTGGAAAAATTACCAA 10625116
Query 1722 GCAGGAAGTCAAAGAGTTCTT 1742
|||||||||||||| || ||
Sbjct 10625117 ACAGGAAGTCAAAGACTTTTT 10625137
>seq3047
Length=5774023
Score = 95.1 bits (104), Expect = 4e-16
Identities = 140/194 (72%), Gaps = 7/194 (4%)
Strand=Plus/Minus
Query 1348 GGCAAGACCAACATTGCGGAAGCCATCGCCCACGCCGTGCCCTTCTACGGCTGCGTCAAC 1407
|| || |||||| | ||| | || | |||||||| | || ||||| |||||| |||
Sbjct 5428568 GGAAAAACCAACCTCGCG-AGGCTACTGCCCACGCTTTTCCGTTCTAGGGCTGCCTCAGG 5428510
Query 1408 TGGACCAATGAGAACTTTCCCTTCAACGATTGCGTCGACAAGATGGTGATCTGGTGGGAG 1467
||| | ||| |||||| ||||| | ||| | || ||| || | | ||||||||||
Sbjct 5428509 TGGCCAAAT----ACTTTCGCTTCAGTGTCTGCCTGGAGAAGCTGATCAGCTGGTGGGAG 5428454
Query 1468 GAGGGCAAGATGACGGCCAAGGTCGTGGAGTCCGCCAAGGCCATTCTCGGCGGCAGCAAG 1527
||||| |||| ||| | || ||||| |||||||||||| |||| || ||||| ||
Sbjct 5428453 GAGGGAAAGAGGACAGTGAAAACGGTGGAATCCGCCAAGGCCTTTCT-GGGGGCAGTGAG 5428395
Query 1528 GTGCGCGTGGACCA 1541
| | | |||||||
Sbjct 5428394 CT-CCCTTGGACCA 5428382
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 14994684352560
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |