Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cavia_20porcellus_20[refseq_20GCF_5F000151735.1_202008-03-03] 3,144 sequences; 2,723,219,641 total letters Query= NC_006260.1 Length=4721 Score E Sequences producing significant alignments: (Bits) Value seq3108 352 9e-94 seq3047 95.1 4e-16 >seq3108 Length=23989115 Score = 352 bits (390), Expect = 9e-94 Identities = 525/741 (71%), Gaps = 4/741 (1%) Strand=Plus/Plus Query 1003 TACATGGAGCTGGTCGGGTGGCTGGTGGACCGGGGCATCACCTCCGAGAAGCAGTGGATC 1062 ||||||| ||| || ||||||||||| | ||||| || ||| |||| |||||| Sbjct 10624400 TACATGGCTCTGATCATCTGGCTGGTGGAGAACCGTATCACGTCTGAGCAGCAATGGATC 10624459 Query 1063 CAGGAGGACCAGGCCTCGTACATCTCCTTCAACGC-CGCCTCCAACTCGCGGTCCCAGAT 1121 |||||| | || | || | || | | | || | ||| | | || ||||| Sbjct 10624460 CAGGAGAATCAAGAGAGTTATCTGTCGTATAGTGGACGGGT--AACGCTTGTTCTCAGAT 10624517 Query 1122 CAAGGCCGCGCTGGACAATGCCGGCAAGATCATGGCGCTGACCAAATCCGCGCCCGACTA 1181 ||||| || || |||||||| ||||||| ||| |||||||| | || | ||||| Sbjct 10624518 CAAGGTGGCTTTGAACAATGCCTGCAAGATTATGAACCTGACCAAGACAGCAGCGGACTA 10624577 Query 1182 CCTGGTGGGGCCCTCGCTGCCCGCGGACATTAAAACCAACCGCATCTACCGCATCCTGGA 1241 ||||||| | || | ||||| | ||| | || || ||| | | Sbjct 10624578 TTTGGTGGGCAAGGAGTCCCCTACCAACATTGAGGAAAACAGGATTTATCGCCTGTTTAG 10624637 Query 1242 GCTGAACGGGTACGATCCTGCCTACGCCGGCTCCGTCTTTCTCGGCTGGGCCCAGAAAAA 1301 ||||| || || ||||| ||||| | || ||| | | || |||||| || || | Sbjct 10624638 ACTGAATGGATATGATCCGGCCTATGGGGGATCCATACTGCTGGGCTGGTGTCAAAAGGA 10624697 Query 1302 GTTCGGGAAGCGCAACACCATCTGGCTGTTTGGGCCCGCCACCACCGGCAAGACCAACAT 1361 | || ||||| |||||| | ||| ||||||| || | ||||| |||||||||||||| Sbjct 10624698 CTCTGGCAAGCGAAACACCTTGTGGGTGTTTGGACCGGTGACCACAGGCAAGACCAACAT 10624757 Query 1362 TGCGGAAGCCATCGCCCACGCCGTGCCCTTCTACGGCTGCGTCAACTGGACCAATGAGAA 1421 | ||| || ||||| || || || | ||| ||||| || || |||||||| |||||||| Sbjct 10624758 CGTGGAGGC-ATCGCTCATGCTGTACGCTTTTACGGGTGTGTAAACTGGACTAATGAGAA 10624816 Query 1422 CTTTCCCTTCAACGATTGCGTCGACAAGATGGTGATCTGGTGGGAGGAGGGCAAGATGAC 1481 ||||||||||||| | ||||||||||||||| | || |||||| |||| ||||||||||| Sbjct 10624817 CTTTCCCTTCAACAACTGCGTCGACAAGATGCTCATTTGGTGGAAGGAAGGCAAGATGAC 10624876 Query 1482 GGCCAAGGTCGTGGAGTCCGCCAAGGCCATTCTCGGCGGCAGCAAGGTGCGCGTGGACCA 1541 ||||||||| ||||| || || |||||||| | || || ||| | || ||||| || Sbjct 10624877 GGCCAAGGTAGTGGAATCTGCTAAGGCCATCTTGGGGGGTGCCAAAGGACGGGTGGATCA 10624936 Query 1542 AAAGTGCAAGTCGTCCGCCCAGATCGACCCCACCCCCGTGATCGTCACCTCCAACACCAA 1601 || || || || |||| || || || ||||||| || ||| | ||||||| | ||| Sbjct 10624937 CAAATGTAAATCCTCCGTACAAATAGATGCCACCCCGGTCATCATTACCTCCAGTAGCAA 10624996 Query 1602 CATGTGCGCCGTGATTGACGGGAACAGCACCACCTTCGAGCACCAGCAGCCGTTGCAGGA 1661 |||| || | | || || || ||| || | ||| || ||| |||||||||| ||||| Sbjct 10624997 CATGGGCTGCATCATCGAGGGAAACTCGACGAACTTTGAACACGAGCAGCCGTTACAGGA 10625056 Query 1662 CCGGATGTTCAAATTTGAACTCACCCGCCGTCTGGAGCACGACTTTGGCAAGGTGACGAA 1721 |||||||| ||||||||||| || | | || | |||||||| || | || || Sbjct 10625057 TCGGATGTTTAAATTTGAACTGACTCAAAGACTCATACGTGACTTTGGAAAAATTACCAA 10625116 Query 1722 GCAGGAAGTCAAAGAGTTCTT 1742 |||||||||||||| || || Sbjct 10625117 ACAGGAAGTCAAAGACTTTTT 10625137 >seq3047 Length=5774023 Score = 95.1 bits (104), Expect = 4e-16 Identities = 140/194 (72%), Gaps = 7/194 (4%) Strand=Plus/Minus Query 1348 GGCAAGACCAACATTGCGGAAGCCATCGCCCACGCCGTGCCCTTCTACGGCTGCGTCAAC 1407 || || |||||| | ||| | || | |||||||| | || ||||| |||||| ||| Sbjct 5428568 GGAAAAACCAACCTCGCG-AGGCTACTGCCCACGCTTTTCCGTTCTAGGGCTGCCTCAGG 5428510 Query 1408 TGGACCAATGAGAACTTTCCCTTCAACGATTGCGTCGACAAGATGGTGATCTGGTGGGAG 1467 ||| | ||| |||||| ||||| | ||| | || ||| || | | |||||||||| Sbjct 5428509 TGGCCAAAT----ACTTTCGCTTCAGTGTCTGCCTGGAGAAGCTGATCAGCTGGTGGGAG 5428454 Query 1468 GAGGGCAAGATGACGGCCAAGGTCGTGGAGTCCGCCAAGGCCATTCTCGGCGGCAGCAAG 1527 ||||| |||| ||| | || ||||| |||||||||||| |||| || ||||| || Sbjct 5428453 GAGGGAAAGAGGACAGTGAAAACGGTGGAATCCGCCAAGGCCTTTCT-GGGGGCAGTGAG 5428395 Query 1528 GTGCGCGTGGACCA 1541 | | | ||||||| Sbjct 5428394 CT-CCCTTGGACCA 5428382 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 14994684352560