Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Cavia_20porcellus_20[refseq_20GCF_5F000151735.1_202008-03-03]
3,144 sequences; 2,723,219,641 total letters
Query= NC_006261.1
Length=4393
Score E
Sequences producing significant alignments: (Bits) Value
seq3108 325 1e-85
seq3047 104 7e-19
>seq3108
Length=23989115
Score = 325 bits (360), Expect = 1e-85
Identities = 519/741 (70%), Gaps = 4/741 (1%)
Strand=Plus/Plus
Query 902 TATATGGAGCTGGTCGGGTGGCTGGTGGACCGGGGCATCACCTCCGAGAAGCAGTGGATC 961
|| |||| ||| || ||||||||||| | ||||| || ||| |||| ||||||
Sbjct 10624400 TACATGGCTCTGATCATCTGGCTGGTGGAGAACCGTATCACGTCTGAGCAGCAATGGATC 10624459
Query 962 CAGGAGGACCAGGCCTCGTACATCTCCTTCAACGC-CGCCTCCAACTCGCGGTCCCAGAT 1020
|||||| | || | || | || | | | || | ||| | | || |||||
Sbjct 10624460 CAGGAGAATCAAGAGAGTTATCTGTCGTATAGTGGACGGGT--AACGCTTGTTCTCAGAT 10624517
Query 1021 CAAGGCCGCGCTGGACAATGCCGGCAAGATCATGGCGCTGACCAAATCCGCGCCCGACTA 1080
||||| || || |||||||| ||||||| ||| |||||||| | || | |||||
Sbjct 10624518 CAAGGTGGCTTTGAACAATGCCTGCAAGATTATGAACCTGACCAAGACAGCAGCGGACTA 10624577
Query 1081 CCTGGTGGGGCCCTCGCTGCCCGCGGACATTACCCAGAACCGCATCTACCGCATCCTCGC 1140
||||||| | || | ||||| | ||| | || || ||| | |
Sbjct 10624578 TTTGGTGGGCAAGGAGTCCCCTACCAACATTGAGGAAAACAGGATTTATCGCCTGTTTAG 10624637
Query 1141 TCTCAACGGCTACGACCCTGCCTACGCCGGCTCCGTCTTTCTCGGCTGGGCTCAGAAAAA 1200
|| || || || || || ||||| | || ||| | | || |||||| ||| || |
Sbjct 10624638 ACTGAATGGATATGATCCGGCCTATGGGGGATCCATACTGCTGGGCTGGTGTCAAAAGGA 10624697
Query 1201 GTTCGGGAAACGCAACACCATCTGGCTGTTTGGACCCGCCACCACCGGCAAGACCAACAT 1260
| || || || |||||| | ||| |||||||||| | ||||| ||||||||||||||
Sbjct 10624698 CTCTGGCAAGCGAAACACCTTGTGGGTGTTTGGACCGGTGACCACAGGCAAGACCAACAT 10624757
Query 1261 TGCGGAAGCCATCGCCCACGCCGTGCCCTTCTACGGCTGCGTCAACTGGACCAATGAGAA 1320
| ||| || ||||| || || || | ||| ||||| || || |||||||| ||||||||
Sbjct 10624758 CGTGGAGGC-ATCGCTCATGCTGTACGCTTTTACGGGTGTGTAAACTGGACTAATGAGAA 10624816
Query 1321 CTTTCCCTTCAATGATTGCGTCGACAAGATGGTGATCTGGTGGGAGGAGGGCAAGATGAC 1380
|||||||||||| | ||||||||||||||| | || |||||| |||| |||||||||||
Sbjct 10624817 CTTTCCCTTCAACAACTGCGTCGACAAGATGCTCATTTGGTGGAAGGAAGGCAAGATGAC 10624876
Query 1381 GGCCAAGGTCGTGGAGTCCGCCAAGGCCATTCTCGGCGGCAGCAAGGTGCGCGTGGACCA 1440
||||||||| ||||| || || |||||||| | || || ||| | || ||||| ||
Sbjct 10624877 GGCCAAGGTAGTGGAATCTGCTAAGGCCATCTTGGGGGGTGCCAAAGGACGGGTGGATCA 10624936
Query 1441 AAAGTGCAAGTCGTCCGCCCAGATCGACCCCACCCCCGTGATCGTCACCTCCAACACCAA 1500
|| || || || |||| || || || ||||||| || ||| | ||||||| | |||
Sbjct 10624937 CAAATGTAAATCCTCCGTACAAATAGATGCCACCCCGGTCATCATTACCTCCAGTAGCAA 10624996
Query 1501 CATGTGCGCCGTGATTGACGGGAACAGCACCACCTTCGAGCACCAGCAGCCTCTCCAGGA 1560
|||| || | | || || || ||| || | ||| || ||| ||||||| | |||||
Sbjct 10624997 CATGGGCTGCATCATCGAGGGAAACTCGACGAACTTTGAACACGAGCAGCCGTTACAGGA 10625056
Query 1561 CCGGATGTTTAAGTTCGAACTCACCCGCCGTCTGGAGCACGACTTTGGCAAGGTGACAAA 1620
||||||||||| || ||||| || | | || | |||||||| || | || ||
Sbjct 10625057 TCGGATGTTTAAATTTGAACTGACTCAAAGACTCATACGTGACTTTGGAAAAATTACCAA 10625116
Query 1621 GCAGGAAGTCAAAGAGTTCTT 1641
|||||||||||||| || ||
Sbjct 10625117 ACAGGAAGTCAAAGACTTTTT 10625137
>seq3047
Length=5774023
Score = 104 bits (114), Expect = 7e-19
Identities = 171/241 (71%), Gaps = 8/241 (3%)
Strand=Plus/Minus
Query 1200 AGTTCGGGAAACGCAACACCATCTGGCTGTTTGGACCCGCCACCACCGGCAAGACCAACA 1259
||| ||| |||| |||| | || | |||||| || | | || || || ||||||
Sbjct 5428614 AGTGCGGAAAACAAAACATCCTCAGT-TGTTTGACCCTGGGATCATGGGAAAAACCAACC 5428556
Query 1260 TTGCGGAAGCCATCGCCCACGCCGTGCCCTTCTACGGCTGCGTCAACTGGACCAATGAGA 1319
| ||| | || | |||||||| | || ||||| |||||| ||| ||| | |||
Sbjct 5428555 TCGCG-AGGCTACTGCCCACGCTTTTCCGTTCTAGGGCTGCCTCAGGTGGCCAAAT---- 5428501
Query 1320 ACTTTCCCTTCAATGATTGCGTCGACAAGATGGTGATCTGGTGGGAGGAGGGCAAGATGA 1379
|||||| ||||| || ||| | || ||| || | | ||||||||||||||| |||| ||
Sbjct 5428500 ACTTTCGCTTCAGTGTCTGCCTGGAGAAGCTGATCAGCTGGTGGGAGGAGGGAAAGAGGA 5428441
Query 1380 CGGCCAAGGTCGTGGAGTCCGCCAAGGCCATTCTCGGCGGCAGCAAGGTGCGCGTGGACC 1439
| | || ||||| |||||||||||| |||| || ||||| || | | | ||||||
Sbjct 5428440 CAGTGAAAACGGTGGAATCCGCCAAGGCCTTTCT-GGGGGCAGTGAGCT-CCCTTGGACC 5428383
Query 1440 A 1440
|
Sbjct 5428382 A 5428382
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 13945120445680
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |