Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cavia_20porcellus_20[refseq_20GCF_5F000151735.1_202008-03-03] 3,144 sequences; 2,723,219,641 total letters Query= NC_006261.1 Length=4393 Score E Sequences producing significant alignments: (Bits) Value seq3108 325 1e-85 seq3047 104 7e-19 >seq3108 Length=23989115 Score = 325 bits (360), Expect = 1e-85 Identities = 519/741 (70%), Gaps = 4/741 (1%) Strand=Plus/Plus Query 902 TATATGGAGCTGGTCGGGTGGCTGGTGGACCGGGGCATCACCTCCGAGAAGCAGTGGATC 961 || |||| ||| || ||||||||||| | ||||| || ||| |||| |||||| Sbjct 10624400 TACATGGCTCTGATCATCTGGCTGGTGGAGAACCGTATCACGTCTGAGCAGCAATGGATC 10624459 Query 962 CAGGAGGACCAGGCCTCGTACATCTCCTTCAACGC-CGCCTCCAACTCGCGGTCCCAGAT 1020 |||||| | || | || | || | | | || | ||| | | || ||||| Sbjct 10624460 CAGGAGAATCAAGAGAGTTATCTGTCGTATAGTGGACGGGT--AACGCTTGTTCTCAGAT 10624517 Query 1021 CAAGGCCGCGCTGGACAATGCCGGCAAGATCATGGCGCTGACCAAATCCGCGCCCGACTA 1080 ||||| || || |||||||| ||||||| ||| |||||||| | || | ||||| Sbjct 10624518 CAAGGTGGCTTTGAACAATGCCTGCAAGATTATGAACCTGACCAAGACAGCAGCGGACTA 10624577 Query 1081 CCTGGTGGGGCCCTCGCTGCCCGCGGACATTACCCAGAACCGCATCTACCGCATCCTCGC 1140 ||||||| | || | ||||| | ||| | || || ||| | | Sbjct 10624578 TTTGGTGGGCAAGGAGTCCCCTACCAACATTGAGGAAAACAGGATTTATCGCCTGTTTAG 10624637 Query 1141 TCTCAACGGCTACGACCCTGCCTACGCCGGCTCCGTCTTTCTCGGCTGGGCTCAGAAAAA 1200 || || || || || || ||||| | || ||| | | || |||||| ||| || | Sbjct 10624638 ACTGAATGGATATGATCCGGCCTATGGGGGATCCATACTGCTGGGCTGGTGTCAAAAGGA 10624697 Query 1201 GTTCGGGAAACGCAACACCATCTGGCTGTTTGGACCCGCCACCACCGGCAAGACCAACAT 1260 | || || || |||||| | ||| |||||||||| | ||||| |||||||||||||| Sbjct 10624698 CTCTGGCAAGCGAAACACCTTGTGGGTGTTTGGACCGGTGACCACAGGCAAGACCAACAT 10624757 Query 1261 TGCGGAAGCCATCGCCCACGCCGTGCCCTTCTACGGCTGCGTCAACTGGACCAATGAGAA 1320 | ||| || ||||| || || || | ||| ||||| || || |||||||| |||||||| Sbjct 10624758 CGTGGAGGC-ATCGCTCATGCTGTACGCTTTTACGGGTGTGTAAACTGGACTAATGAGAA 10624816 Query 1321 CTTTCCCTTCAATGATTGCGTCGACAAGATGGTGATCTGGTGGGAGGAGGGCAAGATGAC 1380 |||||||||||| | ||||||||||||||| | || |||||| |||| ||||||||||| Sbjct 10624817 CTTTCCCTTCAACAACTGCGTCGACAAGATGCTCATTTGGTGGAAGGAAGGCAAGATGAC 10624876 Query 1381 GGCCAAGGTCGTGGAGTCCGCCAAGGCCATTCTCGGCGGCAGCAAGGTGCGCGTGGACCA 1440 ||||||||| ||||| || || |||||||| | || || ||| | || ||||| || Sbjct 10624877 GGCCAAGGTAGTGGAATCTGCTAAGGCCATCTTGGGGGGTGCCAAAGGACGGGTGGATCA 10624936 Query 1441 AAAGTGCAAGTCGTCCGCCCAGATCGACCCCACCCCCGTGATCGTCACCTCCAACACCAA 1500 || || || || |||| || || || ||||||| || ||| | ||||||| | ||| Sbjct 10624937 CAAATGTAAATCCTCCGTACAAATAGATGCCACCCCGGTCATCATTACCTCCAGTAGCAA 10624996 Query 1501 CATGTGCGCCGTGATTGACGGGAACAGCACCACCTTCGAGCACCAGCAGCCTCTCCAGGA 1560 |||| || | | || || || ||| || | ||| || ||| ||||||| | ||||| Sbjct 10624997 CATGGGCTGCATCATCGAGGGAAACTCGACGAACTTTGAACACGAGCAGCCGTTACAGGA 10625056 Query 1561 CCGGATGTTTAAGTTCGAACTCACCCGCCGTCTGGAGCACGACTTTGGCAAGGTGACAAA 1620 ||||||||||| || ||||| || | | || | |||||||| || | || || Sbjct 10625057 TCGGATGTTTAAATTTGAACTGACTCAAAGACTCATACGTGACTTTGGAAAAATTACCAA 10625116 Query 1621 GCAGGAAGTCAAAGAGTTCTT 1641 |||||||||||||| || || Sbjct 10625117 ACAGGAAGTCAAAGACTTTTT 10625137 >seq3047 Length=5774023 Score = 104 bits (114), Expect = 7e-19 Identities = 171/241 (71%), Gaps = 8/241 (3%) Strand=Plus/Minus Query 1200 AGTTCGGGAAACGCAACACCATCTGGCTGTTTGGACCCGCCACCACCGGCAAGACCAACA 1259 ||| ||| |||| |||| | || | |||||| || | | || || || |||||| Sbjct 5428614 AGTGCGGAAAACAAAACATCCTCAGT-TGTTTGACCCTGGGATCATGGGAAAAACCAACC 5428556 Query 1260 TTGCGGAAGCCATCGCCCACGCCGTGCCCTTCTACGGCTGCGTCAACTGGACCAATGAGA 1319 | ||| | || | |||||||| | || ||||| |||||| ||| ||| | ||| Sbjct 5428555 TCGCG-AGGCTACTGCCCACGCTTTTCCGTTCTAGGGCTGCCTCAGGTGGCCAAAT---- 5428501 Query 1320 ACTTTCCCTTCAATGATTGCGTCGACAAGATGGTGATCTGGTGGGAGGAGGGCAAGATGA 1379 |||||| ||||| || ||| | || ||| || | | ||||||||||||||| |||| || Sbjct 5428500 ACTTTCGCTTCAGTGTCTGCCTGGAGAAGCTGATCAGCTGGTGGGAGGAGGGAAAGAGGA 5428441 Query 1380 CGGCCAAGGTCGTGGAGTCCGCCAAGGCCATTCTCGGCGGCAGCAAGGTGCGCGTGGACC 1439 | | || ||||| |||||||||||| |||| || ||||| || | | | |||||| Sbjct 5428440 CAGTGAAAACGGTGGAATCCGCCAAGGCCTTTCT-GGGGGCAGTGAGCT-CCCTTGGACC 5428383 Query 1440 A 1440 | Sbjct 5428382 A 5428382 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 13945120445680