Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cavia_20porcellus_20[refseq_20GCF_5F000151735.1_202008-03-03] 3,144 sequences; 2,723,219,641 total letters Query= NC_006263.1 Length=4682 Score E Sequences producing significant alignments: (Bits) Value seq3108 266 1e-67 >seq3108 Length=23989115 Score = 266 bits (294), Expect = 1e-67 Identities = 330/449 (73%), Gaps = 7/449 (2%) Strand=Plus/Plus Query 1195 GGGTGGTGCCAGAAGAAATGGGGCAAGCGAAACACGCTGTGGCTGTTCGGACCTGCGACC 1254 || ||||| || ||| | | |||||||||||||| ||||| |||| ||||| | |||| Sbjct 10624681 GGCTGGTGTCAAAAGGACTCTGGCAAGCGAAACACCTTGTGGGTGTTTGGACCGGTGACC 10624740 Query 1255 ACCGGCAAGACCAACATCGCGGAGGCTATTGCCCATGCTGTGCCGTTCTATGGATGCGTT 1314 || |||||||||||||||| |||||| || || |||||||| | || || || || || Sbjct 10624741 ACAGGCAAGACCAACATCGTGGAGGC-ATCGCTCATGCTGTACGCTTTTACGGGTGTGTA 10624799 Query 1315 AACTGGACCAACGAGAACTTTCCGTTCAACGACTGCGTCGAAAAGATGATTATCTGGTGG 1374 |||||||| || ||||||||||| |||||| |||||||||| |||||| | || |||||| Sbjct 10624800 AACTGGACTAATGAGAACTTTCCCTTCAACAACTGCGTCGACAAGATGCTCATTTGGTGG 10624859 Query 1375 GAAGAGGGCAAAATGACCGCCAAGGTGGTGGAAACGGCTAAAGCGATTCTGGGAGGATCT 1434 | || ||||| ||||| |||||||| |||||| | ||||| || || |||| || | Sbjct 10624860 AAGGAAGGCAAGATGACGGCCAAGGTAGTGGAATCTGCTAAGGCCATCTTGGGGGGTGCC 10624919 Query 1435 CGGGTGAGAGTGGACCAAAAATGCAAAGCTTCGGTTCCGATCGAACCGACGCCGGTCATT 1494 | | ||||| || ||||| ||| | || || | || || | || |||||||| Sbjct 10624920 AAAGGACGGGTGGATCACAAATGTAAATCCTCCGTACAAATAGATGCCACCCCGGTCATC 10624979 Query 1495 ATTACCAGTAACACCAACATGTGTTATGTCATCGACGGGAACACGACTACGTTCGAGCAT 1554 |||||| | | ||||||| | | ||||||| || ||| |||| | || || || Sbjct 10624980 ATTACCTCCAGTAGCAACATGGGCTGCATCATCGAGGGAAACTCGACGAACTTTGAACAC 10625039 Query 1555 AAGCAGCCGTTGGAGGACAGGATGTTTAAGCTCGAGCTGTTGACTCGTTTACCC---GAT 1611 |||||||||| |||| |||||||||| | || | |||||| || | | Sbjct 10625040 GAGCAGCCGTTACAGGATCGGATGTTTAAATTTGAAC---TGACTCAAAGACTCATACGT 10625096 Query 1612 GACTTTGGTAAGGTGACCAAACAGGAGGT 1640 |||||||| || | ||||||||||| || Sbjct 10625097 GACTTTGGAAAAATTACCAAACAGGAAGT 10625125 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 14869888644120