Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Cavia_20porcellus_20[refseq_20GCF_5F000151735.1_202008-03-03]
3,144 sequences; 2,723,219,641 total letters
Query= NC_006263.1
Length=4682
Score E
Sequences producing significant alignments: (Bits) Value
seq3108 266 1e-67
>seq3108
Length=23989115
Score = 266 bits (294), Expect = 1e-67
Identities = 330/449 (73%), Gaps = 7/449 (2%)
Strand=Plus/Plus
Query 1195 GGGTGGTGCCAGAAGAAATGGGGCAAGCGAAACACGCTGTGGCTGTTCGGACCTGCGACC 1254
|| ||||| || ||| | | |||||||||||||| ||||| |||| ||||| | ||||
Sbjct 10624681 GGCTGGTGTCAAAAGGACTCTGGCAAGCGAAACACCTTGTGGGTGTTTGGACCGGTGACC 10624740
Query 1255 ACCGGCAAGACCAACATCGCGGAGGCTATTGCCCATGCTGTGCCGTTCTATGGATGCGTT 1314
|| |||||||||||||||| |||||| || || |||||||| | || || || || ||
Sbjct 10624741 ACAGGCAAGACCAACATCGTGGAGGC-ATCGCTCATGCTGTACGCTTTTACGGGTGTGTA 10624799
Query 1315 AACTGGACCAACGAGAACTTTCCGTTCAACGACTGCGTCGAAAAGATGATTATCTGGTGG 1374
|||||||| || ||||||||||| |||||| |||||||||| |||||| | || ||||||
Sbjct 10624800 AACTGGACTAATGAGAACTTTCCCTTCAACAACTGCGTCGACAAGATGCTCATTTGGTGG 10624859
Query 1375 GAAGAGGGCAAAATGACCGCCAAGGTGGTGGAAACGGCTAAAGCGATTCTGGGAGGATCT 1434
| || ||||| ||||| |||||||| |||||| | ||||| || || |||| || |
Sbjct 10624860 AAGGAAGGCAAGATGACGGCCAAGGTAGTGGAATCTGCTAAGGCCATCTTGGGGGGTGCC 10624919
Query 1435 CGGGTGAGAGTGGACCAAAAATGCAAAGCTTCGGTTCCGATCGAACCGACGCCGGTCATT 1494
| | ||||| || ||||| ||| | || || | || || | || ||||||||
Sbjct 10624920 AAAGGACGGGTGGATCACAAATGTAAATCCTCCGTACAAATAGATGCCACCCCGGTCATC 10624979
Query 1495 ATTACCAGTAACACCAACATGTGTTATGTCATCGACGGGAACACGACTACGTTCGAGCAT 1554
|||||| | | ||||||| | | ||||||| || ||| |||| | || || ||
Sbjct 10624980 ATTACCTCCAGTAGCAACATGGGCTGCATCATCGAGGGAAACTCGACGAACTTTGAACAC 10625039
Query 1555 AAGCAGCCGTTGGAGGACAGGATGTTTAAGCTCGAGCTGTTGACTCGTTTACCC---GAT 1611
|||||||||| |||| |||||||||| | || | |||||| || | |
Sbjct 10625040 GAGCAGCCGTTACAGGATCGGATGTTTAAATTTGAAC---TGACTCAAAGACTCATACGT 10625096
Query 1612 GACTTTGGTAAGGTGACCAAACAGGAGGT 1640
|||||||| || | ||||||||||| ||
Sbjct 10625097 GACTTTGGAAAAATTACCAAACAGGAAGT 10625125
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 14869888644120
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |