Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Cavia_20porcellus_20[refseq_20GCF_5F000151735.1_202008-03-03]
3,144 sequences; 2,723,219,641 total letters
Query= NC_014468.1
Length=4286
Score E
Sequences producing significant alignments: (Bits) Value
seq3108 232 2e-57
>seq3108
Length=23989115
Score = 232 bits (256), Expect = 2e-57
Identities = 465/691 (67%), Gaps = 8/691 (1%)
Strand=Plus/Plus
Query 843 CAGAATACATGGCGCTCGTCAGGTGGCTCGTGGACAACGGCATCGCGACCGAGCGCGAGT 902
|| |||||||||| || ||| ||||| ||||| ||| | ||| || | |||| | |
Sbjct 10624395 CACAATACATGGCTCTGATCATCTGGCTGGTGGAGAACCGTATCACGTCTGAGCAGCAAT 10624454
Query 903 GGATGCGCGAGGACTCGGACGGGTACCTGAGCTACAACGCCACGGGCGCCACGCGCGCCC 962
|||| | ||| | || | || ||| || | | ||||| | | | | |
Sbjct 10624455 GGATCCAGGAGAATCAAGAGAGTTATCTGTCGTATAGTGG-ACGGGTAACGCTTGTTCTC 10624513
Query 963 AGATCAAGGCCGCGCTCGACAACGCGGCCCGCATCATGGTCAAC---ACGAAGACGGCCG 1019
||||||||| || | |||| || | ||| || | ||| || ||||| || |
Sbjct 10624514 AGATCAAGGTGGCTTTGAACAATGC---CTGCAAGATTATGAACCTGACCAAGACAGCAG 10624570
Query 1020 CCGACTACCTGGTCGGCAGGAACCCGCCCCTCGACGTGGAGGACAACAGGATCTACCGGC 1079
| ||||| |||| |||| | | | || | || | ||||| |||||||| || || |
Sbjct 10624571 CGGACTATTTGGTGGGCAAGGAGTCCCCTACCAACATTGAGGAAAACAGGATTTATCGCC 10624630
Query 1080 TGTTTCGCATGAACGGCTACGACCCCGCCTACGCGGGCAGCGTGCTGCTCGGCTGGTGCC 1139
||||| | |||| || || || || ||||| | ||| | | ||||| |||||||| |
Sbjct 10624631 TGTTTAGACTGAATGGATATGATCCGGCCTATGGGGGATCCATACTGCTGGGCTGGTGTC 10624690
Query 1140 GCACCGGCTTCGGCAAGCGCAACACCGTCTGGCTCTTCGGGCCGGCCACGACCGGCAAGA 1199
| | || |||||||| |||||| | ||| | || || |||| || || |||||||
Sbjct 10624691 AAAAGGACTCTGGCAAGCGAAACACCTTGTGGGTGTTTGGACCGGTGACCACAGGCAAGA 10624750
Query 1200 CGAACCTCGCCGAGGCCATCAGCCACTCGGTGCCCTTCTACGGCTGCGTCAACTGGACCA 1259
| ||| ||| ||||| ||| || | || | ||| ||||| || || |||||||| |
Sbjct 10624751 CCAACATCGTGGAGGC-ATCGCTCATGCTGTACGCTTTTACGGGTGTGTAAACTGGACTA 10624809
Query 1260 ACGAGAACTTCCCCTTCAACGACTGCGTGGACAAGATGATCATCTGGTGGGAGGAGGGCA 1319
| |||||||| ||||||||| ||||||| ||||||||| |||| |||||| |||| ||||
Sbjct 10624810 ATGAGAACTTTCCCTTCAACAACTGCGTCGACAAGATGCTCATTTGGTGGAAGGAAGGCA 10624869
Query 1320 AGATGACGTCCAAGGTCGTCGAGAGCGCCAAGGCCATCCTCGGCGGCAGCAAGGTGCGCG 1379
|||||||| ||||||| || || || ||||||||| | || || ||| | || |
Sbjct 10624870 AGATGACGGCCAAGGTAGTGGAATCTGCTAAGGCCATCTTGGGGGGTGCCAAAGGACGGG 10624929
Query 1380 TCGACCAGAAGTGCAAGAACTCGCAGCAGATCGAGCCCACGCCCGTCATNNNNNNNNNNN 1439
| || || || || || ||| || || || |||| || |||||
Sbjct 10624930 TGGATCACAAATGTAAATCCTCCGTACAAATAGATGCCACCCCGGTCATCATTACCTCCA 10624989
Query 1440 NNNNNNACATGTGCGAGGTCGTCGACGGGAACTCGACCACGTTCGAGCACCGGCAGCCGC 1499
||||| || || |||| || |||||||| | || || ||| |||||||
Sbjct 10624990 GTAGCAACATGGGCTGCATCATCGAGGGAAACTCGACGAACTTTGAACACGAGCAGCCGT 10625049
Query 1500 TCGAGGACAGGATGTTCAAGTTCGAGCTCAC 1530
| |||| ||||||| || || || || ||
Sbjct 10625050 TACAGGATCGGATGTTTAAATTTGAACTGAC 10625080
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 13602732219960
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |