Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cavia_20porcellus_20[refseq_20GCF_5F000151735.1_202008-03-03] 3,144 sequences; 2,723,219,641 total letters Query= NC_014468.1 Length=4286 Score E Sequences producing significant alignments: (Bits) Value seq3108 232 2e-57 >seq3108 Length=23989115 Score = 232 bits (256), Expect = 2e-57 Identities = 465/691 (67%), Gaps = 8/691 (1%) Strand=Plus/Plus Query 843 CAGAATACATGGCGCTCGTCAGGTGGCTCGTGGACAACGGCATCGCGACCGAGCGCGAGT 902 || |||||||||| || ||| ||||| ||||| ||| | ||| || | |||| | | Sbjct 10624395 CACAATACATGGCTCTGATCATCTGGCTGGTGGAGAACCGTATCACGTCTGAGCAGCAAT 10624454 Query 903 GGATGCGCGAGGACTCGGACGGGTACCTGAGCTACAACGCCACGGGCGCCACGCGCGCCC 962 |||| | ||| | || | || ||| || | | ||||| | | | | | Sbjct 10624455 GGATCCAGGAGAATCAAGAGAGTTATCTGTCGTATAGTGG-ACGGGTAACGCTTGTTCTC 10624513 Query 963 AGATCAAGGCCGCGCTCGACAACGCGGCCCGCATCATGGTCAAC---ACGAAGACGGCCG 1019 ||||||||| || | |||| || | ||| || | ||| || ||||| || | Sbjct 10624514 AGATCAAGGTGGCTTTGAACAATGC---CTGCAAGATTATGAACCTGACCAAGACAGCAG 10624570 Query 1020 CCGACTACCTGGTCGGCAGGAACCCGCCCCTCGACGTGGAGGACAACAGGATCTACCGGC 1079 | ||||| |||| |||| | | | || | || | ||||| |||||||| || || | Sbjct 10624571 CGGACTATTTGGTGGGCAAGGAGTCCCCTACCAACATTGAGGAAAACAGGATTTATCGCC 10624630 Query 1080 TGTTTCGCATGAACGGCTACGACCCCGCCTACGCGGGCAGCGTGCTGCTCGGCTGGTGCC 1139 ||||| | |||| || || || || ||||| | ||| | | ||||| |||||||| | Sbjct 10624631 TGTTTAGACTGAATGGATATGATCCGGCCTATGGGGGATCCATACTGCTGGGCTGGTGTC 10624690 Query 1140 GCACCGGCTTCGGCAAGCGCAACACCGTCTGGCTCTTCGGGCCGGCCACGACCGGCAAGA 1199 | | || |||||||| |||||| | ||| | || || |||| || || ||||||| Sbjct 10624691 AAAAGGACTCTGGCAAGCGAAACACCTTGTGGGTGTTTGGACCGGTGACCACAGGCAAGA 10624750 Query 1200 CGAACCTCGCCGAGGCCATCAGCCACTCGGTGCCCTTCTACGGCTGCGTCAACTGGACCA 1259 | ||| ||| ||||| ||| || | || | ||| ||||| || || |||||||| | Sbjct 10624751 CCAACATCGTGGAGGC-ATCGCTCATGCTGTACGCTTTTACGGGTGTGTAAACTGGACTA 10624809 Query 1260 ACGAGAACTTCCCCTTCAACGACTGCGTGGACAAGATGATCATCTGGTGGGAGGAGGGCA 1319 | |||||||| ||||||||| ||||||| ||||||||| |||| |||||| |||| |||| Sbjct 10624810 ATGAGAACTTTCCCTTCAACAACTGCGTCGACAAGATGCTCATTTGGTGGAAGGAAGGCA 10624869 Query 1320 AGATGACGTCCAAGGTCGTCGAGAGCGCCAAGGCCATCCTCGGCGGCAGCAAGGTGCGCG 1379 |||||||| ||||||| || || || ||||||||| | || || ||| | || | Sbjct 10624870 AGATGACGGCCAAGGTAGTGGAATCTGCTAAGGCCATCTTGGGGGGTGCCAAAGGACGGG 10624929 Query 1380 TCGACCAGAAGTGCAAGAACTCGCAGCAGATCGAGCCCACGCCCGTCATNNNNNNNNNNN 1439 | || || || || || ||| || || || |||| || ||||| Sbjct 10624930 TGGATCACAAATGTAAATCCTCCGTACAAATAGATGCCACCCCGGTCATCATTACCTCCA 10624989 Query 1440 NNNNNNACATGTGCGAGGTCGTCGACGGGAACTCGACCACGTTCGAGCACCGGCAGCCGC 1499 ||||| || || |||| || |||||||| | || || ||| ||||||| Sbjct 10624990 GTAGCAACATGGGCTGCATCATCGAGGGAAACTCGACGAACTTTGAACACGAGCAGCCGT 10625049 Query 1500 TCGAGGACAGGATGTTCAAGTTCGAGCTCAC 1530 | |||| ||||||| || || || || || Sbjct 10625050 TACAGGATCGGATGTTTAAATTTGAACTGAC 10625080 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 13602732219960