Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cavia_20porcellus_20[refseq_20GCF_5F000151735.1_202008-03-03] 3,144 sequences; 2,723,219,641 total letters Query= NC_024888.1 Length=4733 Score E Sequences producing significant alignments: (Bits) Value seq3116 183 9e-43 seq2955 176 1e-40 >seq3116 Length=27942054 Score = 183 bits (202), Expect = 9e-43 Identities = 250/345 (72%), Gaps = 8/345 (2%) Strand=Plus/Plus Query 1102 AAACTAATCAAAAACAACAACATGAATCCACAAAAAGTCTAC-CATGCAATAATGTGCTG 1160 ||| || ||||| |||||| |||||| | |||| | || |||||||| |||||||| Sbjct 12834434 AAAATATTCAAACTAAACAACTACAATCCATACAAAG-CAACACATGCAATGATGTGCTG 12834492 Query 1161 CCTTAACAAACAAATGGGCAAAAGAAATACCAT---CTTACTCTGTGGACCTGCAAGCAC 1217 || ||||| || | || ||||||| ||||| ||||| ||||| ||||| || Sbjct 12834493 TCTGAACAAGTAACTAGGTAAAAGAATCACCATTCTCTTACAG---GGACCAGCAAGTAC 12834549 Query 1218 AGGAAAAAGCCTACTAGCTCAAAAAATAGCAAAATTAGTTGGTAACACAGGCTGCTACAA 1277 ||| |||||| || |||| |||||||| | || ||||||| | |||||||||| Sbjct 12834550 AGGTAAAAGCTTAATAGCACAAAAAATTTGTGAGTTGATTGGTAATGTAAGCTGCTACAA 12834609 Query 1278 TCCAAGCAATGCCAACTTCCCATTCAATGACTGTGTAAACAAAAACCTAATCTGGATAGA 1337 |||| ||||| ||||| || || |||||||| || ||||| |||| |||||||| Sbjct 12834610 TCCATCCAATGTAAACTTTCCTTTTAATGACTGCTGCAATAAAAATATAATATGGATAGA 12834669 Query 1338 AGAAGCAGGCAACCTAGGCACTCAAGTTAACTCTTTCAAAGCCATCATGAGTGGCCAAGC 1397 || | |||||| ||||| ||||| ||| || || || || ||| || ||| Sbjct 12834670 GGAGGAAGGCAATCTAGGACAGCAAGTAAACCAATTTAAGGCAATTATGTCAGGACAAAG 12834729 Query 1398 AATCAGACTTGACCAAAAAGGCAAAGGCAGCAAATCAATTGAACC 1442 ||||||| ||||| | ||| || ||||| || ||||||||||| Sbjct 12834730 TATCAGACAAGACCAGAGAGGAAAGGGCAGTAAGTCAATTGAACC 12834774 Score = 111 bits (122), Expect = 5e-21 Identities = 185/260 (71%), Gaps = 8/260 (3%) Strand=Plus/Plus Query 2413 CCTGGATACAACTACCTGGGACCCTTCAATCAAGACTTCA--GCAAAAAACCAACCAATC 2470 ||||||||||||||||||||||| ||| | ||| | | ||||||||||||| | Sbjct 12841273 CCTGGATACAACTACCTGGGACCAGGCAAC--ACACTCAATGGACAAAAACCAACCAACC 12841330 Query 2471 CATCTGACAAAGCCGCAAGAAAACACGATTTGGAATACAACAAACT-CATCAAACAAGGA 2529 |||| || ||||| || | ||||||||| | |||| |||| || || |||||| Sbjct 12841331 CATCAGATAAAGCTGCCAAAAAACACGACAAACATCACAATCAACTGCAACAG-CAAGGA 12841389 Query 2530 CACAATCCTTACTGGAATTACAATCACGCCGACGAGGACTTTATCAAAGAAACTGACCAA 2589 || || | ||| | | |||| | || ||| | || || ||||| |||||| Sbjct 12841390 CATAACCTTTATATTTACTTCAATGAAGCAGACCTACAATTCATAAAAGACACTGACTCT 12841449 Query 2590 GCAACAGACTGGGGAGGAAAGTTTGGTAACTTTATCTTTCGC-GCCAAAAAAGCACTAGC 2648 ||| ||||||||||| | |||||||| ||| | |||| | ||||||| |||| | | Sbjct 12841450 GCAGGTGACTGGGGAGGGCAATTTGGTAA-TTTCTTTTTCACAGCCAAAAGAGCAATCAC 12841508 Query 2649 TCCTGAACTGGCGCCTCCAA 2668 || |||||||| || |||| Sbjct 12841509 ACCAGAACTGGCACCACCAA 12841528 >seq2955 Length=1296243 Score = 176 bits (194), Expect = 1e-40 Identities = 249/346 (72%), Gaps = 3/346 (1%) Strand=Plus/Plus Query 1134 AAAAGTCTACCATGCAATAATGTGCTGCCTTAACAAACAAATGGGCAAAAGAAATACCAT 1193 ||||||| |||||||| | ||||| || ||||| ||| | |||||| |||| || | Sbjct 79759 AAAAGTCATTCATGCAATCACATGCTGTCTAAACAAGCAACTAGGCAAATGAAACACAGT 79818 Query 1194 CTTACTCTGTGGACCTGCAAGCACAGGAAAAAGCCTACTAGCTCAAAAAATAGCAAAATT 1253 ||||| | ||||| | ||||||||| ||| || | | || ||||| | || Sbjct 79819 TTTACTGCAAGAACCTGTTAACACAGGAAAGAGCGTAATCACACAGAAAATTTTGAGGTT 79878 Query 1254 AGTTGGTAACACAGGCTGCTACAATCCAAGCAATGCCAACTTCCCATTCAATGACTG-TG 1312 |||||||| | |||||||||||| | || ||||| || || |||||||| || Sbjct 79879 GGTTGGTAATGTTTGGTGCTACAATCCAGGAGATATTAACTTTCCTTT-AATGACTGCTG 79937 Query 1313 TAAACAAAAACCTAATCTGGATAGAAGAAGCAGGCAACCTAGGCACTCAAGTTAACTCTT 1372 | | ||| || ||| ||||||||||||| || || |||| | ||||| ||| | Sbjct 79938 CAGA-AAAGACATAACTCGGATAGAAGAAGCTGGAAATTTAGGGAAGCAAGTAAACCAAT 79996 Query 1373 TCAAAGCCATCATGAGTGGCCAAGCAATCAGACTTGACCAAAAAGGCAAAGGCAGCAAAT 1432 |||| || |||||| || || || |||||||| |||||| | ||||| ||||||| Sbjct 79997 TCAAGGCAATCATGTCAGGGCACATCATTAGACTTGATCAAAAAAGGAAAGGTAGCAAAT 80056 Query 1433 CAATTGAACCAACTCCAGTAATCATGACAACCAATGAAGACATCAC 1478 | ||||||||||| |||||||||| || | || ||| ||||| || Sbjct 80057 CCATTGAACCAACATCAGTAATCATAACTAGCAGTGAGGACATTAC 80102 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 15033083032080