Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Cavia_20porcellus_20[refseq_20GCF_5F000151735.1_202008-03-03]
3,144 sequences; 2,723,219,641 total letters
Query= NC_024888.1
Length=4733
Score E
Sequences producing significant alignments: (Bits) Value
seq3116 183 9e-43
seq2955 176 1e-40
>seq3116
Length=27942054
Score = 183 bits (202), Expect = 9e-43
Identities = 250/345 (72%), Gaps = 8/345 (2%)
Strand=Plus/Plus
Query 1102 AAACTAATCAAAAACAACAACATGAATCCACAAAAAGTCTAC-CATGCAATAATGTGCTG 1160
||| || ||||| |||||| |||||| | |||| | || |||||||| ||||||||
Sbjct 12834434 AAAATATTCAAACTAAACAACTACAATCCATACAAAG-CAACACATGCAATGATGTGCTG 12834492
Query 1161 CCTTAACAAACAAATGGGCAAAAGAAATACCAT---CTTACTCTGTGGACCTGCAAGCAC 1217
|| ||||| || | || ||||||| ||||| ||||| ||||| ||||| ||
Sbjct 12834493 TCTGAACAAGTAACTAGGTAAAAGAATCACCATTCTCTTACAG---GGACCAGCAAGTAC 12834549
Query 1218 AGGAAAAAGCCTACTAGCTCAAAAAATAGCAAAATTAGTTGGTAACACAGGCTGCTACAA 1277
||| |||||| || |||| |||||||| | || ||||||| | ||||||||||
Sbjct 12834550 AGGTAAAAGCTTAATAGCACAAAAAATTTGTGAGTTGATTGGTAATGTAAGCTGCTACAA 12834609
Query 1278 TCCAAGCAATGCCAACTTCCCATTCAATGACTGTGTAAACAAAAACCTAATCTGGATAGA 1337
|||| ||||| ||||| || || |||||||| || ||||| |||| ||||||||
Sbjct 12834610 TCCATCCAATGTAAACTTTCCTTTTAATGACTGCTGCAATAAAAATATAATATGGATAGA 12834669
Query 1338 AGAAGCAGGCAACCTAGGCACTCAAGTTAACTCTTTCAAAGCCATCATGAGTGGCCAAGC 1397
|| | |||||| ||||| ||||| ||| || || || || ||| || |||
Sbjct 12834670 GGAGGAAGGCAATCTAGGACAGCAAGTAAACCAATTTAAGGCAATTATGTCAGGACAAAG 12834729
Query 1398 AATCAGACTTGACCAAAAAGGCAAAGGCAGCAAATCAATTGAACC 1442
||||||| ||||| | ||| || ||||| || |||||||||||
Sbjct 12834730 TATCAGACAAGACCAGAGAGGAAAGGGCAGTAAGTCAATTGAACC 12834774
Score = 111 bits (122), Expect = 5e-21
Identities = 185/260 (71%), Gaps = 8/260 (3%)
Strand=Plus/Plus
Query 2413 CCTGGATACAACTACCTGGGACCCTTCAATCAAGACTTCA--GCAAAAAACCAACCAATC 2470
||||||||||||||||||||||| ||| | ||| | | ||||||||||||| |
Sbjct 12841273 CCTGGATACAACTACCTGGGACCAGGCAAC--ACACTCAATGGACAAAAACCAACCAACC 12841330
Query 2471 CATCTGACAAAGCCGCAAGAAAACACGATTTGGAATACAACAAACT-CATCAAACAAGGA 2529
|||| || ||||| || | ||||||||| | |||| |||| || || ||||||
Sbjct 12841331 CATCAGATAAAGCTGCCAAAAAACACGACAAACATCACAATCAACTGCAACAG-CAAGGA 12841389
Query 2530 CACAATCCTTACTGGAATTACAATCACGCCGACGAGGACTTTATCAAAGAAACTGACCAA 2589
|| || | ||| | | |||| | || ||| | || || ||||| ||||||
Sbjct 12841390 CATAACCTTTATATTTACTTCAATGAAGCAGACCTACAATTCATAAAAGACACTGACTCT 12841449
Query 2590 GCAACAGACTGGGGAGGAAAGTTTGGTAACTTTATCTTTCGC-GCCAAAAAAGCACTAGC 2648
||| ||||||||||| | |||||||| ||| | |||| | ||||||| |||| | |
Sbjct 12841450 GCAGGTGACTGGGGAGGGCAATTTGGTAA-TTTCTTTTTCACAGCCAAAAGAGCAATCAC 12841508
Query 2649 TCCTGAACTGGCGCCTCCAA 2668
|| |||||||| || ||||
Sbjct 12841509 ACCAGAACTGGCACCACCAA 12841528
>seq2955
Length=1296243
Score = 176 bits (194), Expect = 1e-40
Identities = 249/346 (72%), Gaps = 3/346 (1%)
Strand=Plus/Plus
Query 1134 AAAAGTCTACCATGCAATAATGTGCTGCCTTAACAAACAAATGGGCAAAAGAAATACCAT 1193
||||||| |||||||| | ||||| || ||||| ||| | |||||| |||| || |
Sbjct 79759 AAAAGTCATTCATGCAATCACATGCTGTCTAAACAAGCAACTAGGCAAATGAAACACAGT 79818
Query 1194 CTTACTCTGTGGACCTGCAAGCACAGGAAAAAGCCTACTAGCTCAAAAAATAGCAAAATT 1253
||||| | ||||| | ||||||||| ||| || | | || ||||| | ||
Sbjct 79819 TTTACTGCAAGAACCTGTTAACACAGGAAAGAGCGTAATCACACAGAAAATTTTGAGGTT 79878
Query 1254 AGTTGGTAACACAGGCTGCTACAATCCAAGCAATGCCAACTTCCCATTCAATGACTG-TG 1312
|||||||| | |||||||||||| | || ||||| || || |||||||| ||
Sbjct 79879 GGTTGGTAATGTTTGGTGCTACAATCCAGGAGATATTAACTTTCCTTT-AATGACTGCTG 79937
Query 1313 TAAACAAAAACCTAATCTGGATAGAAGAAGCAGGCAACCTAGGCACTCAAGTTAACTCTT 1372
| | ||| || ||| ||||||||||||| || || |||| | ||||| ||| |
Sbjct 79938 CAGA-AAAGACATAACTCGGATAGAAGAAGCTGGAAATTTAGGGAAGCAAGTAAACCAAT 79996
Query 1373 TCAAAGCCATCATGAGTGGCCAAGCAATCAGACTTGACCAAAAAGGCAAAGGCAGCAAAT 1432
|||| || |||||| || || || |||||||| |||||| | ||||| |||||||
Sbjct 79997 TCAAGGCAATCATGTCAGGGCACATCATTAGACTTGATCAAAAAAGGAAAGGTAGCAAAT 80056
Query 1433 CAATTGAACCAACTCCAGTAATCATGACAACCAATGAAGACATCAC 1478
| ||||||||||| |||||||||| || | || ||| ||||| ||
Sbjct 80057 CCATTGAACCAACATCAGTAATCATAACTAGCAGTGAGGACATTAC 80102
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 15033083032080
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |