Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cavia_20porcellus_20[refseq_20GCF_5F000151735.1_202008-03-03] 3,144 sequences; 2,723,219,641 total letters Query= NC_026815.1 Length=4613 Score E Sequences producing significant alignments: (Bits) Value seq3116 235 2e-58 seq2955 228 2e-56 >seq3116 Length=27942054 Score = 235 bits (260), Expect = 2e-58 Identities = 245/320 (77%), Gaps = 6/320 (2%) Strand=Plus/Plus Query 1191 AACCCATACAAAGTATTTCATGCAATGATGTGCTGTCTAAACAAACAAATGGGCAAAAGA 1250 || |||||||||| | |||||||||||||||||||| ||||| || | || |||||| Sbjct 12834458 AATCCATACAAAGCAACACATGCAATGATGTGCTGTCTGAACAAGTAACTAGGTAAAAGA 12834517 Query 1251 AACACAA---TCTTACTTTGTGGTCCAGCAAGTACTGGAAAAAGCCTAATAGCACAAAAA 1307 | ||| | |||||| || ||||||||||| || |||||| |||||||||||||| Sbjct 12834518 ATCACCATTCTCTTAC---AGGGACCAGCAAGTACAGGTAAAAGCTTAATAGCACAAAAA 12834574 Query 1308 ATTGCTCAATTGGTTGGTAATGTAGGATGCTACAATCCAAGCAATGTTAACTTTCCATTC 1367 ||| | | ||| ||||||||||| | |||||||||||| |||||| |||||||| || Sbjct 12834575 ATTTGTGAGTTGATTGGTAATGTAAGCTGCTACAATCCATCCAATGTAAACTTTCCTTTT 12834634 Query 1368 AACGATTGTAGCAACAAAAACCTAATATGGATAGAAGAAGCAGGAAACTTTGGAACTCAA 1427 || || || |||| ||||| ||||||||||||| || | ||| || | ||| ||| Sbjct 12834635 AATGACTGCTGCAATAAAAATATAATATGGATAGAGGAGGAAGGCAATCTAGGACAGCAA 12834694 Query 1428 GTAAACCAATTTAAAGCAATCATGAGTGGCCAAGCAATTAGACTAGACCAAAAAGGCAAA 1487 |||||||||||||| ||||| ||| || ||| || |||| |||||| | ||| || Sbjct 12834695 GTAAACCAATTTAAGGCAATTATGTCAGGACAAAGTATCAGACAAGACCAGAGAGGAAAG 12834754 Query 1488 GGTAGCAAAACCATCGAACC 1507 || || || | || ||||| Sbjct 12834755 GGCAGTAAGTCAATTGAACC 12834774 >seq2955 Length=1296243 Score = 228 bits (252), Expect = 2e-56 Identities = 281/383 (73%), Gaps = 1/383 (0%) Strand=Plus/Plus Query 1200 AAAGTATTTCATGCAATGATGTGCTGTCTAAACAAACAAATGGGCAAAAGAAACACAATC 1259 ||||| |||||||||| | |||||||||||||| ||| | |||||| |||||||| | Sbjct 79760 AAAGTCATTCATGCAATCACATGCTGTCTAAACAAGCAACTAGGCAAATGAAACACAGTT 79819 Query 1260 TTACTTTGTGGTCCAGCAAGTACTGGAAAAAGCCTAATAGCACAAAAAATTGCTCAATTG 1319 ||||| | || | | || ||||| ||| |||| |||| |||||| ||| Sbjct 79820 TTACTGCAAGAACCTGTTAACACAGGAAAGAGCGTAATCACACAGAAAATTTTGAGGTTG 79879 Query 1320 GTTGGTAATGTAGGATGCTACAATCCAAGCAATGTTAACTTTCCATTCAACGATTGTAGC 1379 ||||||||||| | |||||||||||| | || |||||||||| || || || || || Sbjct 79880 GTTGGTAATGTTTGGTGCTACAATCCAGGAGATATTAACTTTCCTTT-AATGACTGCTGC 79938 Query 1380 AACAAAAACCTAATATGGATAGAAGAAGCAGGAAACTTTGGAACTCAAGTAAACCAATTT 1439 | ||| || ||| ||||||||||||| ||||| || || | |||||||||||||| Sbjct 79939 AGAAAAGACATAACTCGGATAGAAGAAGCTGGAAATTTAGGGAAGCAAGTAAACCAATTC 79998 Query 1440 AAAGCAATCATGAGTGGCCAAGCAATTAGACTAGACCAAAAAGGCAAAGGTAGCAAAACC 1499 || ||||||||| || || |||||||| || |||||| | |||||||||||| || Sbjct 79999 AAGGCAATCATGTCAGGGCACATCATTAGACTTGATCAAAAAAGGAAAGGTAGCAAATCC 80058 Query 1500 ATCGAACCAACTCCAGTTATAATGACAACAAATGAAGACATAACAAGAGTTGTGGTAGGG 1559 || |||||||| |||| || || || | | ||| ||||| || ||| | | Sbjct 80059 ATTGAACCAACATCAGTAATCATAACTAGCAGTGAGGACATTACTGTTGTTAGAATTGAA 80118 Query 1560 TCTGAACTTAGACCAGAACATAA 1582 | | || ||||||||||||| || Sbjct 80119 TGTAAAATTAGACCAGAACACAA 80141 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 14649096236880