Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Cavia_20porcellus_20[refseq_20GCF_5F000151735.1_202008-03-03]
3,144 sequences; 2,723,219,641 total letters
Query= NC_026815.1
Length=4613
Score E
Sequences producing significant alignments: (Bits) Value
seq3116 235 2e-58
seq2955 228 2e-56
>seq3116
Length=27942054
Score = 235 bits (260), Expect = 2e-58
Identities = 245/320 (77%), Gaps = 6/320 (2%)
Strand=Plus/Plus
Query 1191 AACCCATACAAAGTATTTCATGCAATGATGTGCTGTCTAAACAAACAAATGGGCAAAAGA 1250
|| |||||||||| | |||||||||||||||||||| ||||| || | || ||||||
Sbjct 12834458 AATCCATACAAAGCAACACATGCAATGATGTGCTGTCTGAACAAGTAACTAGGTAAAAGA 12834517
Query 1251 AACACAA---TCTTACTTTGTGGTCCAGCAAGTACTGGAAAAAGCCTAATAGCACAAAAA 1307
| ||| | |||||| || ||||||||||| || |||||| ||||||||||||||
Sbjct 12834518 ATCACCATTCTCTTAC---AGGGACCAGCAAGTACAGGTAAAAGCTTAATAGCACAAAAA 12834574
Query 1308 ATTGCTCAATTGGTTGGTAATGTAGGATGCTACAATCCAAGCAATGTTAACTTTCCATTC 1367
||| | | ||| ||||||||||| | |||||||||||| |||||| |||||||| ||
Sbjct 12834575 ATTTGTGAGTTGATTGGTAATGTAAGCTGCTACAATCCATCCAATGTAAACTTTCCTTTT 12834634
Query 1368 AACGATTGTAGCAACAAAAACCTAATATGGATAGAAGAAGCAGGAAACTTTGGAACTCAA 1427
|| || || |||| ||||| ||||||||||||| || | ||| || | ||| |||
Sbjct 12834635 AATGACTGCTGCAATAAAAATATAATATGGATAGAGGAGGAAGGCAATCTAGGACAGCAA 12834694
Query 1428 GTAAACCAATTTAAAGCAATCATGAGTGGCCAAGCAATTAGACTAGACCAAAAAGGCAAA 1487
|||||||||||||| ||||| ||| || ||| || |||| |||||| | ||| ||
Sbjct 12834695 GTAAACCAATTTAAGGCAATTATGTCAGGACAAAGTATCAGACAAGACCAGAGAGGAAAG 12834754
Query 1488 GGTAGCAAAACCATCGAACC 1507
|| || || | || |||||
Sbjct 12834755 GGCAGTAAGTCAATTGAACC 12834774
>seq2955
Length=1296243
Score = 228 bits (252), Expect = 2e-56
Identities = 281/383 (73%), Gaps = 1/383 (0%)
Strand=Plus/Plus
Query 1200 AAAGTATTTCATGCAATGATGTGCTGTCTAAACAAACAAATGGGCAAAAGAAACACAATC 1259
||||| |||||||||| | |||||||||||||| ||| | |||||| |||||||| |
Sbjct 79760 AAAGTCATTCATGCAATCACATGCTGTCTAAACAAGCAACTAGGCAAATGAAACACAGTT 79819
Query 1260 TTACTTTGTGGTCCAGCAAGTACTGGAAAAAGCCTAATAGCACAAAAAATTGCTCAATTG 1319
||||| | || | | || ||||| ||| |||| |||| |||||| |||
Sbjct 79820 TTACTGCAAGAACCTGTTAACACAGGAAAGAGCGTAATCACACAGAAAATTTTGAGGTTG 79879
Query 1320 GTTGGTAATGTAGGATGCTACAATCCAAGCAATGTTAACTTTCCATTCAACGATTGTAGC 1379
||||||||||| | |||||||||||| | || |||||||||| || || || || ||
Sbjct 79880 GTTGGTAATGTTTGGTGCTACAATCCAGGAGATATTAACTTTCCTTT-AATGACTGCTGC 79938
Query 1380 AACAAAAACCTAATATGGATAGAAGAAGCAGGAAACTTTGGAACTCAAGTAAACCAATTT 1439
| ||| || ||| ||||||||||||| ||||| || || | ||||||||||||||
Sbjct 79939 AGAAAAGACATAACTCGGATAGAAGAAGCTGGAAATTTAGGGAAGCAAGTAAACCAATTC 79998
Query 1440 AAAGCAATCATGAGTGGCCAAGCAATTAGACTAGACCAAAAAGGCAAAGGTAGCAAAACC 1499
|| ||||||||| || || |||||||| || |||||| | |||||||||||| ||
Sbjct 79999 AAGGCAATCATGTCAGGGCACATCATTAGACTTGATCAAAAAAGGAAAGGTAGCAAATCC 80058
Query 1500 ATCGAACCAACTCCAGTTATAATGACAACAAATGAAGACATAACAAGAGTTGTGGTAGGG 1559
|| |||||||| |||| || || || | | ||| ||||| || ||| | |
Sbjct 80059 ATTGAACCAACATCAGTAATCATAACTAGCAGTGAGGACATTACTGTTGTTAGAATTGAA 80118
Query 1560 TCTGAACTTAGACCAGAACATAA 1582
| | || ||||||||||||| ||
Sbjct 80119 TGTAAAATTAGACCAGAACACAA 80141
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 14649096236880
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |