Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cavia_20porcellus_20[refseq_20GCF_5F000151735.1_202008-03-03] 3,144 sequences; 2,723,219,641 total letters Query= NC_028650.1 Length=4634 Score E Sequences producing significant alignments: (Bits) Value seq3116 224 3e-55 seq2955 205 3e-49 >seq3116 Length=27942054 Score = 224 bits (248), Expect = 3e-55 Identities = 240/317 (76%), Gaps = 0/317 (0%) Strand=Plus/Plus Query 1299 AATCCaaaaaaaGTATTTCATGCAATTATGTGCTGTCTAAACAAACAGATGGGAAAAAGA 1358 |||||| | |||| | |||||||| ||||||||||| ||||| | | || |||||| Sbjct 12834458 AATCCATACAAAGCAACACATGCAATGATGTGCTGTCTGAACAAGTAACTAGGTAAAAGA 12834517 Query 1359 AACACAATTCTACTTTGTGGTCCAGCAAGTACAGGAAAAAGCTTACTAGCACAAAAAATA 1418 | ||| ||||| | || |||||||||||||| ||||||||| ||||||||||||| Sbjct 12834518 ATCACCATTCTCTTACAGGGACCAGCAAGTACAGGTAAAAGCTTAATAGCACAAAAAATT 12834577 Query 1419 GCTCAGTTAGTTGGAAATGTAGGTTGCTACAACGCTAGCAATGTAAACTTTCCATTCAAT 1478 | |||| |||| |||||| | |||||||| | ||||||||||||||| || ||| Sbjct 12834578 TGTGAGTTGATTGGTAATGTAAGCTGCTACAATCCATCCAATGTAAACTTTCCTTTTAAT 12834637 Query 1479 GATTGTAGCAACAAAAACCTAATATGGATAGAAGAAGCAGGAAACTTTGGAACTCAAGTA 1538 || || |||| ||||| ||||||||||||| || | ||| || | ||| |||||| Sbjct 12834638 GACTGCTGCAATAAAAATATAATATGGATAGAGGAGGAAGGCAATCTAGGACAGCAAGTA 12834697 Query 1539 AACCAATTCAAAGCAATCATGAGTGGTCAATCAATCAGACTAGACCAAAAAGGCAAAGGC 1598 |||||||| || ||||| ||| || ||| ||||||| |||||| | ||| || ||| Sbjct 12834698 AACCAATTTAAGGCAATTATGTCAGGACAAAGTATCAGACAAGACCAGAGAGGAAAGGGC 12834757 Query 1599 AGCAAAACCATAGAACC 1615 || || | || ||||| Sbjct 12834758 AGTAAGTCAATTGAACC 12834774 >seq2955 Length=1296243 Score = 205 bits (226), Expect = 3e-49 Identities = 256/347 (74%), Gaps = 3/347 (1%) Strand=Plus/Plus Query 1307 aaaaGTATTTCATGCAATTATGTGCTGTCTAAACAAACAGATGGGAAAAAGAAACACAAT 1366 |||||| |||||||||| | |||||||||||||| || | || ||| |||||||| | Sbjct 79759 AAAAGTCATTCATGCAATCACATGCTGTCTAAACAAGCAACTAGGCAAATGAAACACAGT 79818 Query 1367 TCTACTTTGTGGTCCAGCAAGTACAGGAAAAAGCTTACTAGCACAAAAAATAGCTCAGTT 1426 | |||| | || | | |||||||| ||| || | |||| ||||| ||| Sbjct 79819 TTTACTGCAAGAACCTGTTAACACAGGAAAGAGCGTAATCACACAGAAAATTTTGAGGTT 79878 Query 1427 AGTTGGAAATGTAGGTTGCTACAACGCTAGCAATGTAAACTTTCCATTCAATGATTGTAG 1486 ||||| ||||| | |||||||| | | || | |||||||| || ||||| || | Sbjct 79879 GGTTGGTAATGTTTGGTGCTACAATCCAGGAGATATTAACTTTCCTTT-AATGACTGCTG 79937 Query 1487 CAACAAAAACCTAATATGGATAGAAGAAGCAGGAAACTTTGGAACTCAAGTAAACCAATT 1546 || ||| || ||| ||||||||||||| ||||| || || | |||||||||||||| Sbjct 79938 CAGAAAAGACATAACTCGGATAGAAGAAGCTGGAAATTTAGGGAAGCAAGTAAACCAATT 79997 Query 1547 CAAAGCAATCATGAGTGGTCA-ATCAATCAGACTAGACCAAAAAGGCAAAGGCAGCAAAA 1605 ||| ||||||||| || || ||| || ||||| || |||||| | ||||| |||||| Sbjct 79998 CAAGGCAATCATGTCAGGGCACATC-ATTAGACTTGATCAAAAAAGGAAAGGTAGCAAAT 80056 Query 1606 CCATAGAACCAACTCCAGTAATTATGACCACAAATGAAGACATTACT 1652 |||| |||||||| ||||||| || || | | ||| ||||||||| Sbjct 80057 CCATTGAACCAACATCAGTAATCATAACTAGCAGTGAGGACATTACT 80103 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 14716293926040