Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cavia_20porcellus_20[refseq_20GCF_5F000151735.1_202008-03-03] 3,144 sequences; 2,723,219,641 total letters Query= NC_029797.1 Length=4765 Score E Sequences producing significant alignments: (Bits) Value seq3116 255 2e-64 seq2955 217 4e-53 >seq3116 Length=27942054 Score = 255 bits (282), Expect = 2e-64 Identities = 254/329 (77%), Gaps = 0/329 (0%) Strand=Plus/Plus Query 1132 AAACTAATCAAAGACAACAACATGAATCCATACAAAGTATTCCATGCAATCATGTGCTGT 1191 ||| || ||||| |||||| ||||||||||||| | |||||||| ||||||||| Sbjct 12834434 AAAATATTCAAACTAAACAACTACAATCCATACAAAGCAACACATGCAATGATGTGCTGT 12834493 Query 1192 CTCAACAAACAAATGGGCAAAAGAAACACCATTCTACTGTGTGGGCCTGCAAGCACTGGC 1251 || ||||| || | || ||||||| ||||||||| | || || ||||| || || Sbjct 12834494 CTGAACAAGTAACTAGGTAAAAGAATCACCATTCTCTTACAGGGACCAGCAAGTACAGGT 12834553 Query 1252 AAAAGCCTAATAGCACAAAAAATATGCCAACTGGTTGGTAATGTTGGTTGCTACAATGCC 1311 |||||| |||||||||||||||| || | || |||||||||| | ||||||||| | Sbjct 12834554 AAAAGCTTAATAGCACAAAAAATTTGTGAGTTGATTGGTAATGTAAGCTGCTACAATCCA 12834613 Query 1312 TCAAATGTAAACTTTCCTTTCAATGACTGCAGCAACAAAAATATAATCTGGGTAGAAGAA 1371 || ||||||||||||||||| ||||||||| |||| ||||||||||| ||| |||| || Sbjct 12834614 TCCAATGTAAACTTTCCTTTTAATGACTGCTGCAATAAAAATATAATATGGATAGAGGAG 12834673 Query 1372 GCTGGCAACTTTGGAGGCCAAGTAAACCAATTCAAAACAATCATGAGTGGCCAATCAATC 1431 | ||||| | ||| |||||||||||||| || |||| ||| || ||| ||| Sbjct 12834674 GAAGGCAATCTAGGACAGCAAGTAAACCAATTTAAGGCAATTATGTCAGGACAAAGTATC 12834733 Query 1432 AGACTTGACCAAAAAGGAAAAGGCAGTAA 1460 |||| ||||| | |||||| |||||||| Sbjct 12834734 AGACAAGACCAGAGAGGAAAGGGCAGTAA 12834762 Score = 145 bits (160), Expect = 2e-31 Identities = 190/260 (73%), Gaps = 6/260 (2%) Strand=Plus/Plus Query 2412 CCTGGTTACAACTATCTAGGACCAGGCAACACCAACTTCAA---AAAACAACCAACCAAT 2468 ||||| |||||||| || |||||||||||||| ||| ||| | || |||||||||| Sbjct 12841273 CCTGGATACAACTACCTGGGACCAGGCAACAC--ACT-CAATGGACAAAAACCAACCAAC 12841329 Query 2469 CCATCTGACAAAGCAGCAAGAAACCATGACTTGGAATACAACAAAATCTTAAAAGAAGGA 2528 ||||| || ||||| || | ||| || ||| | |||| || | | | ||||| Sbjct 12841330 CCATCAGATAAAGCTGCCAAAAAACACGACAAACATCACAATCAACTGCAACAGCAAGGA 12841389 Query 2529 CAAAATCCATACATCTACTTCAACCACGCAGACGAGGACTTCATCAAAGCAACTGACCAA 2588 || || | || || |||||||| | |||||| | ||||| |||| |||||| Sbjct 12841390 CATAACCTTTATATTTACTTCAATGAAGCAGACCTACAATTCATAAAAGACACTGACTCT 12841449 Query 2589 GCAAGTGACTGGGGAGGAAAATTTGGAAACTTCATTTTCAGAGCaaaaaaaTCACTTGCA 2648 ||| ||||||||||||| ||||||| || ||| |||||| ||| |||| | || | || Sbjct 12841450 GCAGGTGACTGGGGAGGGCAATTTGGTAATTTCTTTTTCACAGCCAAAAGAGCAATCACA 12841509 Query 2649 CCTGAACTGGCTCCAGCAAA 2668 || |||||||| ||| |||| Sbjct 12841510 CCAGAACTGGCACCACCAAA 12841529 >seq2955 Length=1296243 Score = 217 bits (240), Expect = 4e-53 Identities = 281/384 (73%), Gaps = 3/384 (1%) Strand=Plus/Plus Query 1165 AAAGTATTCCATGCAATCATGTGCTGTCTCAACAAACAAATGGGCAAAAGAAACACCATT 1224 ||||| | |||||||||| |||||||| ||||| ||| | |||||| ||||||| || Sbjct 79760 AAAGTCATTCATGCAATCACATGCTGTCTAAACAAGCAACTAGGCAAATGAAACACAGTT 79819 Query 1225 CTACTGTGTGGGCCTGCAAGCACTGGCAAAAGCCTAATAGCACAAAAAATATGCCAACTG 1284 ||||| | |||| | ||| || || ||| |||| |||| ||||| | || Sbjct 79820 TTACTGCAAGAACCTGTTAACACAGGAAAGAGCGTAATCACACAGAAAATTTTGAGGTTG 79879 Query 1285 GTTGGTAATGTTGGTTGCTACAATGCCTCAAATGTAAACTTTCCTTTCAATGACTGCAGC 1344 |||||||||||| | ||||||||| | | || | ||||||||||| ||||||||| || Sbjct 79880 GTTGGTAATGTTTGGTGCTACAATCCAGGAGATATTAACTTTCCTTT-AATGACTGCTGC 79938 Query 1345 AACAAAAATATAATCTGGGTAGAAGAAGCTGGCAACTTTGGAGGCCAAGTAAACCAATTC 1404 | ||| | |||| || ||||||||||||| || || || ||||||||||||||| Sbjct 79939 AGAAAAGACATAACTCGGATAGAAGAAGCTGGAAATTTAGGGAAGCAAGTAAACCAATTC 79998 Query 1405 AAAACAATCATGAGTGGCCA-ATCAATCAGACTTGACCAAAAAGGAAAAGGCAGTAAAGA 1463 || |||||||| || || ||| || |||||||| |||||| | ||||| || ||| Sbjct 79999 AAGGCAATCATGTCAGGGCACATC-ATTAGACTTGATCAAAAAAGGAAAGGTAGCAAATC 80057 Query 1464 AATCCAACCAACTCCAGTCATAATGACTACAAATGAAGACATAACCAAAGTAATGATAGG 1523 || ||||||| |||| || || |||| | ||| ||||| || || | || | Sbjct 80058 CATTGAACCAACATCAGTAATCATAACTAGCAGTGAGGACATTACTGTTGTTAGAATTGA 80117 Query 1524 ATGTGAACTCAAACCAGAACACAA 1547 |||| || | | |||||||||||| Sbjct 80118 ATGTAAAATTAGACCAGAACACAA 80141 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 15135479510800