Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Cavia_20porcellus_20[refseq_20GCF_5F000151735.1_202008-03-03]
3,144 sequences; 2,723,219,641 total letters
Query= NC_029797.1
Length=4765
Score E
Sequences producing significant alignments: (Bits) Value
seq3116 255 2e-64
seq2955 217 4e-53
>seq3116
Length=27942054
Score = 255 bits (282), Expect = 2e-64
Identities = 254/329 (77%), Gaps = 0/329 (0%)
Strand=Plus/Plus
Query 1132 AAACTAATCAAAGACAACAACATGAATCCATACAAAGTATTCCATGCAATCATGTGCTGT 1191
||| || ||||| |||||| ||||||||||||| | |||||||| |||||||||
Sbjct 12834434 AAAATATTCAAACTAAACAACTACAATCCATACAAAGCAACACATGCAATGATGTGCTGT 12834493
Query 1192 CTCAACAAACAAATGGGCAAAAGAAACACCATTCTACTGTGTGGGCCTGCAAGCACTGGC 1251
|| ||||| || | || ||||||| ||||||||| | || || ||||| || ||
Sbjct 12834494 CTGAACAAGTAACTAGGTAAAAGAATCACCATTCTCTTACAGGGACCAGCAAGTACAGGT 12834553
Query 1252 AAAAGCCTAATAGCACAAAAAATATGCCAACTGGTTGGTAATGTTGGTTGCTACAATGCC 1311
|||||| |||||||||||||||| || | || |||||||||| | ||||||||| |
Sbjct 12834554 AAAAGCTTAATAGCACAAAAAATTTGTGAGTTGATTGGTAATGTAAGCTGCTACAATCCA 12834613
Query 1312 TCAAATGTAAACTTTCCTTTCAATGACTGCAGCAACAAAAATATAATCTGGGTAGAAGAA 1371
|| ||||||||||||||||| ||||||||| |||| ||||||||||| ||| |||| ||
Sbjct 12834614 TCCAATGTAAACTTTCCTTTTAATGACTGCTGCAATAAAAATATAATATGGATAGAGGAG 12834673
Query 1372 GCTGGCAACTTTGGAGGCCAAGTAAACCAATTCAAAACAATCATGAGTGGCCAATCAATC 1431
| ||||| | ||| |||||||||||||| || |||| ||| || ||| |||
Sbjct 12834674 GAAGGCAATCTAGGACAGCAAGTAAACCAATTTAAGGCAATTATGTCAGGACAAAGTATC 12834733
Query 1432 AGACTTGACCAAAAAGGAAAAGGCAGTAA 1460
|||| ||||| | |||||| ||||||||
Sbjct 12834734 AGACAAGACCAGAGAGGAAAGGGCAGTAA 12834762
Score = 145 bits (160), Expect = 2e-31
Identities = 190/260 (73%), Gaps = 6/260 (2%)
Strand=Plus/Plus
Query 2412 CCTGGTTACAACTATCTAGGACCAGGCAACACCAACTTCAA---AAAACAACCAACCAAT 2468
||||| |||||||| || |||||||||||||| ||| ||| | || ||||||||||
Sbjct 12841273 CCTGGATACAACTACCTGGGACCAGGCAACAC--ACT-CAATGGACAAAAACCAACCAAC 12841329
Query 2469 CCATCTGACAAAGCAGCAAGAAACCATGACTTGGAATACAACAAAATCTTAAAAGAAGGA 2528
||||| || ||||| || | ||| || ||| | |||| || | | | |||||
Sbjct 12841330 CCATCAGATAAAGCTGCCAAAAAACACGACAAACATCACAATCAACTGCAACAGCAAGGA 12841389
Query 2529 CAAAATCCATACATCTACTTCAACCACGCAGACGAGGACTTCATCAAAGCAACTGACCAA 2588
|| || | || || |||||||| | |||||| | ||||| |||| ||||||
Sbjct 12841390 CATAACCTTTATATTTACTTCAATGAAGCAGACCTACAATTCATAAAAGACACTGACTCT 12841449
Query 2589 GCAAGTGACTGGGGAGGAAAATTTGGAAACTTCATTTTCAGAGCaaaaaaaTCACTTGCA 2648
||| ||||||||||||| ||||||| || ||| |||||| ||| |||| | || | ||
Sbjct 12841450 GCAGGTGACTGGGGAGGGCAATTTGGTAATTTCTTTTTCACAGCCAAAAGAGCAATCACA 12841509
Query 2649 CCTGAACTGGCTCCAGCAAA 2668
|| |||||||| ||| ||||
Sbjct 12841510 CCAGAACTGGCACCACCAAA 12841529
>seq2955
Length=1296243
Score = 217 bits (240), Expect = 4e-53
Identities = 281/384 (73%), Gaps = 3/384 (1%)
Strand=Plus/Plus
Query 1165 AAAGTATTCCATGCAATCATGTGCTGTCTCAACAAACAAATGGGCAAAAGAAACACCATT 1224
||||| | |||||||||| |||||||| ||||| ||| | |||||| ||||||| ||
Sbjct 79760 AAAGTCATTCATGCAATCACATGCTGTCTAAACAAGCAACTAGGCAAATGAAACACAGTT 79819
Query 1225 CTACTGTGTGGGCCTGCAAGCACTGGCAAAAGCCTAATAGCACAAAAAATATGCCAACTG 1284
||||| | |||| | ||| || || ||| |||| |||| ||||| | ||
Sbjct 79820 TTACTGCAAGAACCTGTTAACACAGGAAAGAGCGTAATCACACAGAAAATTTTGAGGTTG 79879
Query 1285 GTTGGTAATGTTGGTTGCTACAATGCCTCAAATGTAAACTTTCCTTTCAATGACTGCAGC 1344
|||||||||||| | ||||||||| | | || | ||||||||||| ||||||||| ||
Sbjct 79880 GTTGGTAATGTTTGGTGCTACAATCCAGGAGATATTAACTTTCCTTT-AATGACTGCTGC 79938
Query 1345 AACAAAAATATAATCTGGGTAGAAGAAGCTGGCAACTTTGGAGGCCAAGTAAACCAATTC 1404
| ||| | |||| || ||||||||||||| || || || |||||||||||||||
Sbjct 79939 AGAAAAGACATAACTCGGATAGAAGAAGCTGGAAATTTAGGGAAGCAAGTAAACCAATTC 79998
Query 1405 AAAACAATCATGAGTGGCCA-ATCAATCAGACTTGACCAAAAAGGAAAAGGCAGTAAAGA 1463
|| |||||||| || || ||| || |||||||| |||||| | ||||| || |||
Sbjct 79999 AAGGCAATCATGTCAGGGCACATC-ATTAGACTTGATCAAAAAAGGAAAGGTAGCAAATC 80057
Query 1464 AATCCAACCAACTCCAGTCATAATGACTACAAATGAAGACATAACCAAAGTAATGATAGG 1523
|| ||||||| |||| || || |||| | ||| ||||| || || | || |
Sbjct 80058 CATTGAACCAACATCAGTAATCATAACTAGCAGTGAGGACATTACTGTTGTTAGAATTGA 80117
Query 1524 ATGTGAACTCAAACCAGAACACAA 1547
|||| || | | ||||||||||||
Sbjct 80118 ATGTAAAATTAGACCAGAACACAA 80141
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 15135479510800
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |