Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cavia_20porcellus_20[refseq_20GCF_5F000151735.1_202008-03-03] 3,144 sequences; 2,723,219,641 total letters Query= NC_030837.1 Length=4639 Score E Sequences producing significant alignments: (Bits) Value seq3116 205 3e-49 seq2955 185 3e-43 >seq3116 Length=27942054 Score = 205 bits (226), Expect = 3e-49 Identities = 250/341 (73%), Gaps = 0/341 (0%) Strand=Plus/Plus Query 1225 aaaCTAATCAAAAACAACAAAATGAATCCATACAAAGTTTACCATGCAATGAGCTGTTGC 1284 ||| || ||||| ||||| ||||||||||||| |||||||||| || || Sbjct 12834434 AAAATATTCAAACTAAACAACTACAATCCATACAAAGCAACACATGCAATGATGTGCTGT 12834493 Query 1285 CTTAACAAACAACTAGGCAAACGAAACACAATCCTACTATGTGGACCTGCAAGTACAGGC 1344 || ||||| ||||||| ||| ||| ||| || || || ||||| ||||||||||| Sbjct 12834494 CTGAACAAGTAACTAGGTAAAAGAATCACCATTCTCTTACAGGGACCAGCAAGTACAGGT 12834553 Query 1345 AAAAGCCTACTAGCACAAGAAATAGCAAAACTAGTTGGTAATGTTGGATGCTATAATGCA 1404 |||||| || |||||||| |||| | | |||||||||| | ||||| ||| || Sbjct 12834554 AAAAGCTTAATAGCACAAAAAATTTGTGAGTTGATTGGTAATGTAAGCTGCTACAATCCA 12834613 Query 1405 GCAAATCAAAACTTTCCATTCAATGACTGTAGCAACAAAAACCTAATCTGGGTAGAAGAA 1464 | ||| ||||||||| || |||||||| |||| ||||| |||| ||| |||| || Sbjct 12834614 TCCAATGTAAACTTTCCTTTTAATGACTGCTGCAATAAAAATATAATATGGATAGAGGAG 12834673 Query 1465 GCTGGTAACTTTGGTGTACAAGTAAACCAATTTAAAGCAATTATGAGTGGCCAGGCAATC 1524 | || || | || ||||||||||||||||| ||||||||| || || ||| Sbjct 12834674 GAAGGCAATCTAGGACAGCAAGTAAACCAATTTAAGGCAATTATGTCAGGACAAAGTATC 12834733 Query 1525 AGACTAGACCAAAAAGGCAAAGGCAGCAAATCAATTGAACC 1565 |||| |||||| | ||| || ||||| || ||||||||||| Sbjct 12834734 AGACAAGACCAGAGAGGAAAGGGCAGTAAGTCAATTGAACC 12834774 Score = 105 bits (116), Expect = 2e-19 Identities = 182/262 (69%), Gaps = 2/262 (1%) Strand=Plus/Plus Query 2511 ACTCTACCTGGATACAACTATCTAGGACCGGGTAACA-ACAACTTTAAGAAGAAACCTAC 2569 || ||||||||||||||||| || ||||| || |||| || | | || ||||| || Sbjct 12841267 ACGCTACCTGGATACAACTACCTGGGACCAGGCAACACACTCAATGGACAA-AAACCAAC 12841325 Query 2570 AAATCCATCTGACAAAGCCGCACGCAAACACGATTTAGAATACAGCAAACTTATCCAACA 2629 || ||||| || ||||| || |||||||| | | ||| |||| || || Sbjct 12841326 CAACCCATCAGATAAAGCTGCCAAAAAACACGACAAACATCACAATCAACTGCAACAGCA 12841385 Query 2630 AGGACACAATCCATACATCTACTTCAACCAAGCCGACGACGACTTCATCAAAAACACTGA 2689 |||||| || | || || |||||||| |||| ||| | ||||| ||| ||||||| Sbjct 12841386 AGGACATAACCTTTATATTTACTTCAATGAAGCAGACCTACAATTCATAAAAGACACTGA 12841445 Query 2690 CCAAGCACCAGACTGGGGTGGTAAGTTCGGTAACTTTGCCTTCAGACTAAAAAAGGCAAT 2749 | ||| |||||||| || | || ||||| || |||| | |||| ||||| Sbjct 12841446 CTCTGCAGGTGACTGGGGAGGGCAATTTGGTAATTTCTTTTTCACAGCCAAAAGAGCAAT 12841505 Query 2750 AGCACCTGAACTGGCACCTCCA 2771 |||| ||||||||||| ||| Sbjct 12841506 CACACCAGAACTGGCACCACCA 12841527 >seq2955 Length=1296243 Score = 185 bits (204), Expect = 3e-43 Identities = 335/484 (69%), Gaps = 7/484 (1%) Strand=Plus/Plus Query 1267 CATGCAATGAGCTGTTGCCTTAACAAACAACTAGGCAAACGAAACACAATCCTACTATGT 1326 |||||||| | || || || ||||| |||||||||||| |||||||| | |||| Sbjct 79769 CATGCAATCACATGCTGTCTAAACAAGCAACTAGGCAAATGAAACACAGTTTTACTGCAA 79828 Query 1327 GGACCTGCAAGTACAGGCAAAAGCCTACTAGCACAAGAAATAGCAAAACTAGTTGGTAAT 1386 | ||||| | ||||| || ||| || | |||| |||| | | ||||||||| Sbjct 79829 GAACCTGTTAACACAGGAAAGAGCGTAATCACACAGAAAATTTTGAGGTTGGTTGGTAAT 79888 Query 1387 GTTGGATGCTATAATGCAGCAAATCAAAACTTTCCATTCAATGACTGTAGCAACAAAAAC 1446 ||| | ||||| ||| ||| | || |||||||| || |||||||| ||| ||| || Sbjct 79889 GTTTGGTGCTACAATCCAGGAGATATTAACTTTCCTTT-AATGACTGCTGCAGAAAAGAC 79947 Query 1447 CTAATCTGGGTAGAAGAAGCTGGTAACTTTGGTGTACAAGTAAACCAATTTAAAGCAATT 1506 ||| || ||||||||||||| || || || |||||||||||||| || ||||| Sbjct 79948 ATAACTCGGATAGAAGAAGCTGGAAATTTAGGGAAGCAAGTAAACCAATTCAAGGCAATC 80007 Query 1507 ATGAGTGGCCAGGCAATCAGACTAGACCAAAAAGGCAAAGGCAGCAAATCAATTGAACCA 1566 ||| || || || ||||| || |||||| | ||||| |||||||| ||||||||| Sbjct 80008 ATGTCAGGGCACATCATTAGACTTGATCAAAAAAGGAAAGGTAGCAAATCCATTGAACCA 80067 Query 1567 ACTCCAGTCATTATGACTACTAATGAAGATATCACAAGAGTCATGGTTGGTTCTGAACTA 1626 || |||| || || |||| | ||| || || || || | ||| | | || | Sbjct 80068 ACATCAGTAATCATAACTAGCAGTGAGGACATTACTGTTGTTAGAATTGAATGTAAAATT 80127 Query 1627 AAACCAGAACACAAACAACCTATCATGGACAGATGTGTCAGAATCTATCTAAACAATAGA 1686 | |||||||||| || ||| || | ||| ||||||| || | ||| ||| Sbjct 80128 AGACCAGAACAC-AATGACCAATTAAACACATTTGTGTCAATATAAGATTCAAC--CAGA 80184 Query 1687 CTA--AATGGTGACTTTGGTTTGCTTGAACACAATGAAATTCCAAGCATATTC-AAACAC 1743 ||| ||| | |||| |||| |||| || || |||| ||| || ||| |||| | Sbjct 80185 CTATGGATGATAGGTTTGTTTTGATTGAGCATAAATAAATAACAAATATCTTCAAAACTC 80244 Query 1744 TTGA 1747 |||| Sbjct 80245 TTGA 80248 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 14732293375840