Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chinchilla_20lanigera_20[refseq_20GCF_5F000276665.1_202012-08-28] 2,839 sequences; 2,390,868,971 total letters Query= NC_001401.2 Length=4679 Score E Sequences producing significant alignments: (Bits) Value seq50 214 5e-52 seq12 158 4e-35 seq35 95.1 4e-16 >seq50 Length=18100965 Score = 214 bits (236), Expect = 5e-52 Identities = 524/791 (66%), Gaps = 5/791 (1%) Strand=Plus/Minus Query 988 GGTACATGGAGCTGGTCGGGTGGCTCGTGGACAAGGGGATTACCTCGGAGAAGCAGTGGA 1047 |||||| || || ||| ||||||||| || || || ||||| ||| || ||| Sbjct 18095306 GGTACACGGCCCTCGTCCAATGGCTCGTGCGGAACGGCATCACCTCCGAGCAGGCTTGGG 18095247 Query 1048 TCCAGGAGGACCAGGCCTCATACATCTCCTTCAATGCGGCCTCCAACTCGCGGTCCCAAA 1107 | ||||||| | ||| ||| | |||||| | ||| || ||||| | || Sbjct 18095246 CGCGGGAGGACTGCGACTCGTACGTGTCCTTCCACGCGTCCAAGGACTCGAGAGGTCAGG 18095187 Query 1108 TCAAGGCTGCCTTGGACAATGCGGGAAAGATTATGAGCCTGACTAAAACCGCCCCCGACT 1167 ||||||| ||| || |||||| | | | | | | ||||| || ||||| | |||| Sbjct 18095186 TCAAGGCGGCCCTGCGCAATGCCCGCACGCT---GTGTCTGACCAAGACCGCGGCAGACT 18095130 Query 1168 ACCTGGTGGGCCAGCAGCCCGTGGAGGACATTTC-CAGCAATCGGATTTATAAAATTTTG 1226 ||||||||| ||| || || |||||| ||| || || | || | || Sbjct 18095129 ACCTGGTGGCGGAGCGCGCCCCCGACGACATTCGGCAG-AACCGTGTCTACCGCCTCTTC 18095071 Query 1227 GAACTAAACGGGTACGATCCCCAATATGCGGCTTCCGTCTTTCTGGGATGGGCCACGAAA 1286 || ||| | ||||| || || |||| | | | ||||| ||| ||| | Sbjct 18095070 AGCCTCAACAGCTACGAGCCGGCCTACGCGGGAAGCCTGCTGCTGGGGTGGTGCACCAGG 18095011 Query 1287 AAGTTCGGCAAGAGGAACACCATCTGGCTGTTTGGGCCTGCAACTACCGGGAAGACCAAC 1346 ||||||| ||| | |||||| | ||||| || || || | | ||||| ||||||||| Sbjct 18095010 GAGTTCGGGAAGCGAAACACCGTATGGCTCTTCGGACCGCCCTCGACCGGCAAGACCAAC 18094951 Query 1347 ATCGCGGAGGCCATAGCCCACACTGTGCCCTTCTACGGGTGCGTAAACTGGACCAATGAG 1406 | ||||||||||| || ||||| |||||| | | || ||||| | |||||| ||| Sbjct 18094950 CTGGCGGAGGCCATCGCTCACACCGTGCCCATGTTCGAATGCGTCAGCTGGACGAATAGC 18094891 Query 1407 AACTTTCCCTTCAACGACTGTGTCGACAAGATGGTGATCTGGTGGGAGGAGGGGAAGATG 1466 ||||| || |||| ||||| |||| || ||| | |||||||||||||| ||||||||| Sbjct 18094890 AACTTCCCTTTCAGAGACTGCGTCGGAAAAATGCTCATCTGGTGGGAGGAAGGGAAGATG 18094831 Query 1467 ACCGCCAAGGTCGTGGAGTCGGCCAAAGCCATTCTCGGAGGAAGCAAGGTGCGCGTGGAC 1526 || ||| | | || || || || ||| | || || || |||||| ||| Sbjct 18094830 ACGTCCAGAATGCTCGAATCAGCTAAGGCCGTCCTAGGGGGCTCTGCGGTGCGTGTGCCT 18094771 Query 1527 CAGAAATGCAAGTCCTCGGCCCAGATAGACCCGACTCCCGTGATCGTCACCTCCAACACC 1586 ||||| | || ||| ||||||||| || || || || ||| ||||||||| | Sbjct 18094770 CAGAAGCGGGAGGTCTCCAGCCAGATAGAGCCCACCCCGGTCATCATCACCTCCAGCCAG 18094711 Query 1587 AACATGTGCGCCGTGATTGACGGGAACTCAACGACCTTCGAACACCAGCAGCCGTTGCAA 1646 |||||||| | | | ||||| || | | |||| | ||||| | || | || | Sbjct 18094710 GACATGTGCAGCATCGTGGACGGACACGCCCAGGCCTTGGCACACCGGAAGGCCCTGGAG 18094651 Query 1647 GACCGGATGTTCAAATTTGAACTCACCCGCCGTCTGGATCATGACTTTGGGAAGGTCACC 1706 || || ||||||||| | |||| | | ||| || || ||||||||| ||||| Sbjct 18094650 GAGCGCATGTTCAAACTAAAACTGGACAAGAGGCTGCCTCCGGAGTTTGGGAAGATCACC 18094591 Query 1707 AAGCAGGAAGTCAAAGACTTTTTCCGGTGGGCAAAGGATCACGTGGTTGAGGTGGAGCAT 1766 | |||||| || || || || |||||| || || ||| ||||||||| Sbjct 18094590 AGGCAGGAGGTGCGGGAGTTCCTCGCGTGGGCCCGCGAGAACAGGGTGCCCGTGGAGCAT 18094531 Query 1767 GAATTCTACGT 1777 || |||| ||| Sbjct 18094530 GAGTTCTGCGT 18094520 >seq12 Length=33761702 Score = 158 bits (174), Expect = 4e-35 Identities = 244/342 (71%), Gaps = 6/342 (2%) Strand=Plus/Plus Query 1401 AATGAGAACTTTCCCTTCAACGACTGTGTCGACAAGATGGTGATCTGGTGGGAGGAGGGG 1460 ||| | ||||||||||||| | | | || || ||| | |||||||||| |||||| Sbjct 22669255 AATAAAAACTTTCCCTTCAGTGGCCCC-TGGATAAAATGATTGTCTGGTGGGAAGAGGGG 22669313 Query 1461 AAGATGACCGCCAAGGTCGTGGAGTCGGCCAAAGCCATTCTCGGAG-GAAGCAAGGTGCG 1519 |||||||| |||||||| || || || || ||||| ||| || | | |||||||| || Sbjct 22669314 AAGATGACAGCCAAGGTGGTAGAATCCCTCACAGCCACTCTTGGGGAGCAGCAAGGTCCG 22669373 Query 1520 CGTGGACCAGAAATGCAAGTCCTCGGCCCAGATAGACCCGACTCCCGTGATCGTCACCTC 1579 ||||| ||||| | || || || | | | |||| | ||| | || || | | Sbjct 22669374 TGTGGATGAGAAAGGTAAATCTTCAGATGAACTGGACCAAAGTCCTGCCATTGTGATCAG 22669433 Query 1580 CAACACCAACATGTGCGCCGTGATTGACGGGAACTCAACGACCTTCGAACACCAGCAGCC 1639 ||||| |||||||| || || |||| || || | || |||| || ||||||||| Sbjct 22669434 GAACACTGACATGTGCACCTTGGTTGATGGAAATTAGACCGCCTTGGAGCACCAGCAGTG 22669493 Query 1640 GTTGCAAGACCGGATGTTCAAATTTGAACTCACCCGCCGTCTGGATCATGA-CTTTGGGA 1698 | |||||| |||||| || |||| | || | | ||||||| ||| |||||| | Sbjct 22669494 CCTCCAAGACTGGATGTCCACATTTCAGCTGGCATACAGTCTGGAAT-TGAGCTTTGGCA 22669552 Query 1699 AGGTCACCAAGCAGGAAGTCAAAGAC--TTTTTCCGGTGGGC 1738 | ||||||| ||||| ||||||||| ||||||| |||||| Sbjct 22669553 AAATCACCAAACAGGAGGTCAAAGACTTTTTTTCCAGTGGGC 22669594 Score = 145 bits (160), Expect = 2e-31 Identities = 234/331 (71%), Gaps = 4/331 (1%) Strand=Plus/Plus Query 1401 AATGAGAACTTTCCCTTCAACGACTGTGTCGACAAGATGGTGATCTGGTGGGAGGAGGGG 1460 ||| ||||||||||||||| | | | || || ||| | |||||||||| |||||| Sbjct 22702389 AATAAGAACTTTCCCTTCAGTGGCCCC-TGGATAAAATGATTGTCTGGTGGGAAGAGGGG 22702447 Query 1461 AAGATGACCGCCAAGGTCGTGGAGTCGGCCAAAGCCATTCTCGGAG-GAAGCAAGGTGCG 1519 ||||| || |||||||| || || || || ||||| | | || | | |||||||| || Sbjct 22702448 AAGATAACAGCCAAGGTGGTAGAATCCCTCACAGCCAGTGTTGGGGAGCAGCAAGGTCCG 22702507 Query 1520 CGTGGACCAGAAATGCAAGTCCTCGGCCCAGATAGACCCGACTCCCGTGATCGTCACCTC 1579 ||||| ||||| | || || || | | | |||| | ||| | || || | | Sbjct 22702508 TGTGGATGAGAAAGGTAAATCTTCAGATGAACTGGACCAAAGTCCTGCCATTGTGAACAG 22702567 Query 1580 CAACACCAACATGTGCGCCGTGATTGACGGGAACTCAACGACCTTCGAACACCAGCAGCC 1639 |||||| |||||||| || || |||| || || | || ||| || ||||||||| Sbjct 22702568 CAACACTGACATGTGCACCTTGGTTGATGGAAATTAGACCGCCTGGGAGCACCAGCAGTG 22702627 Query 1640 GTTGCAAGACCGGATGTTCAAATTTGAACTCACCCGCCGTCTGGATCATGA-CTTTGGGA 1698 | ||||| |||||| || |||| | || | | ||||||| ||| |||||| | Sbjct 22702628 CCTCTAAGACTGGATGTCCACATTTCAGCTGGCATACAGTCTGGAAT-TGAGCTTTGGCA 22702686 Query 1699 AGGTCACCAAGCAGGAAGTCAAAGACTTTTT 1729 | ||||||| ||||| |||||||||||||| Sbjct 22702687 AAATCACCAAACAGGAGGTCAAAGACTTTTT 22702717 >seq35 Length=22390816 Score = 95.1 bits (104), Expect = 4e-16 Identities = 120/160 (75%), Gaps = 5/160 (3%) Strand=Plus/Minus Query 3015 CTACTTTGGCTACAGCACCCCTTGGGGGTATTTTGACTTCAACAGATTCCACTGCCACT- 3073 ||||||||| | |||||| | |||| ||||||||||||| ||| ||||||| |||| | Sbjct 13654357 CTACTTTGGATGCAGCACTCTTTGGAGGTATTTTGACTTTAACCAATTCCACAGCCATTG 13654298 Query 3074 -TTTCACCACGTGACTGGCAAAGACTCATCAACAACAACTGGGGATTCCGACCCAAGAGA 3132 || ||| | |||| ||||| |||| |||| || || |||| ||| | | ||| || Sbjct 13654297 GAGTCCCCA-GAGACTAGCAAATACTCTCCAACTACCACAGGGG-TTCTGTCTCAAAAGT 13654240 Query 3133 CTCAACTTCAAGCTCTTTAACATTCAAGTCAAAGAGGTCA 3172 ||||| ||| |||||| || || |||||||| |||| Sbjct 13654239 CTCAAAGAAAAG-ACTTTAATATCCATGTCAAAGAAGTCA 13654201 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 14860338548940