Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chinchilla_20lanigera_20[refseq_20GCF_5F000276665.1_202012-08-28] 2,839 sequences; 2,390,868,971 total letters Query= NC_001510.1 Length=5149 Score E Sequences producing significant alignments: (Bits) Value seq33 215 2e-52 seq132 145 2e-31 >seq33 Length=23381312 Score = 215 bits (238), Expect = 2e-52 Identities = 302/421 (72%), Gaps = 2/421 (0%) Strand=Plus/Minus Query 1431 AAAAGAAATACTGTTTTATTTCATGGACCAGCCAGCACAGGCAAATCTATTATTGCACAA 1490 || ||||| || | | || || |||||||| |||||||| ||| | | || |||||| Sbjct 14639962 AAGAGAAACACAATACTCTTACAAGGACCAGCAAGCACAGGAAAAAGTCTAATAGCACAA 14639903 Query 1491 GCCATAGCACAAGCAGTTGGCAATGTTGGTTGCTATAATGCAGCCAATGTAAACTTTCCA 1550 ||| || ||||| ||| |||| |||||||| |||| | ||||||||||| Sbjct 14639902 AAAATAAGTGAATTGGTTGGTAATATTGGATGCTATAACCCAGCAGACATAAACTTTCCA 14639843 Query 1551 TTTAATGACTGTACCAACAAGAACTTGATTTGGGTAGAAGAAGCTGGTAACTTTGGACAG 1610 ||||| | || ||||| || | |||||| ||||||| || || | | | |||||| Sbjct 14639842 TTTAACCATTGCTGTAACAAAAATATCATTTGGATAGAAGAGGCAGGAATCCTAGGACAG 14639783 Query 1611 CAAGTAAACCAGTTTAAAGCCATT-TGCTCTGGTCAAACTATTCGCATTGATCAAAAAGG 1669 ||||| ||||| || |||||||| ||| |||| |||| || | | || |||||||| Sbjct 14639782 CAAGTCAACCAATTCAAAGCCATAATGC-CTGGACAAAGCATAAGACTAGACCAAAAAGG 14639724 Query 1670 AAAAGGCAGCAAACAGATTGAACCAACACCAGTCATCATGACCACAAATGAGAACATTAC 1729 ||||||| |||| || |||||||| || || || ||||| | |||||| |||| || Sbjct 14639723 AAAAGGCTCCAAATCAATAGAACCAACTCCGGTAATTATGACAAGTAATGAGGACATCAC 14639664 Query 1730 AGTGGTCAGAATAGGCTGCGAAGAAAGACCAGAACACACTCAACCAATCAGAGACAGAAT 1789 | | ||||||||||| || ||| ||||| ||||| || ||||||| | | ||||| Sbjct 14639663 AATTGTCAGAATAGGATGTGAAATTAGACCTAAACACTCTGAACCAATTAAACACAGATG 14639604 Query 1790 GCTTAACATTCATCTAACACATACCTTGCCTGGTGACTTTGGTTTGGTTGACAAAAATGA 1849 |||||||| | || || | || || |||| |||||||| |||| || || || Sbjct 14639603 TGTTAACATTAAACTCACCAAAACTTTAGATGGTAGGTTTGGTTTAATTGAAAATAAAGA 14639544 Query 1850 A 1850 | Sbjct 14639543 A 14639543 >seq132 Length=3867412 Score = 145 bits (160), Expect = 2e-31 Identities = 317/470 (67%), Gaps = 6/470 (1%) Strand=Plus/Minus Query 1384 TTAAAGTTTGCCATGCTATTTGCTGTGTTTTAAACAGACAAGGAGGCAAAAGAAATACTG 1443 ||||||| |||||||| || || | | |||| |||| ||| || |||| ||| Sbjct 462478 TTAAAGTCTGCCATGCCATCATGTGCAGTCTCAACAAACAACTAGGAAAGAGAAGCACTA 462419 Query 1444 TTTTATTTCATGGACCAGCCAGCACAGGCAAA--TCTATTATTGCACAAGCCATAGCACA 1501 || | || |||||||| |||||| ||| ||| ||| || ||| || | Sbjct 462418 CCCTACTACAGGGACCAGCAGACACAGGAAAAAGTCTCTTA--GCTCAAAAAATCTGTGA 462361 Query 1502 AGCAGTTGGCAATGTTGGTTGCTATAATGCAGCCAATGTAAACTTTCCATTTAATGACTG 1561 | ||||| || |||| ||||| || |||| || |||||||||| || ||||||| Sbjct 462360 ATTTGTTGGTAACATTGGCTGCTACAACCCAGCTAACTTAAACTTTCCTTTCAATGACTC 462301 Query 1562 TACCAACAAGAACTTGATTTGGGTAGAAGAAGCTGGTAACTTTGGACAGCAAGTAAACCA 1621 |||||| || | || ||||| || ||||| || ||| | || || || || ||||| Sbjct 462300 CTGCAACAAATACATAATATGGGTTGAGGAAGCAGGAAACGTAGGTCATCAGGTCAACCA 462241 Query 1622 GTTTAAAGCCATTTGCTCTGGTCAAACTATTCGCATTGATCAAAAAGGAAAAGGCAGCAA 1681 ||||||| || || | |||| ||| | | || || |||||||||||||||| Sbjct 462240 ATTTAAAGTGATCATGTCAAGGCAAAGCATTAGACTAGACCAGAAAGGAAAAGGCAGCAG 462181 Query 1682 ACAGATTGAACCAACACCAGTCATCATGACCACAAATGAGAACATTACAGTGGTCAGAAT 1741 | || || ||||| ||||| || ||||||| || || || || |||||||| Sbjct 462180 ATCAATAGAGCCAACTCCAGTAATTATGACCAGCAACAAGGGTATCACCACAGTCAGAAT 462121 Query 1742 AGGCTGCGAAGA-AAGACCAGAACACACTCAACCAATCAGAGACAGAATGCTTAACATTC 1800 || ||| |||| ||||| || |||| | ||||| | | | ||||| | || ||| Sbjct 462120 TGGTTGC-AAGATCAGACCTGAGCACAGTGAACCACTGAAACACAGATGTGTCAATATTA 462062 Query 1801 ATCTAACACATACCTTGCCTGGTGACTTTGGTTTGGTTGACAAAAATGAA 1850 || || | ||||| |||| | |||| |||| | || || || ||| Sbjct 462061 GACTCACCAAAACCTTAGATGGTAAGTTTGATTTGTTAGAAAATAAAGAA 462012 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 16364291847390